Pradoshia sp. D12: F7984_00290
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Entry
F7984_00290 CDS
T06218
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prd
Pradoshia sp. D12
Pathway
prd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F7984_00290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prd03400
]
F7984_00290 (mfd)
Enzymes [BR:
prd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F7984_00290 (mfd)
DNA repair and recombination proteins [BR:
prd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F7984_00290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
IstB_IS21
RecG_dom3_C
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QFK69841
UniProt:
A0A5J6XKV1
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All DBs
Position
55362..58898
Genome browser
AA seq
1178 aa
AA seq
DB search
MNKLQQLLTDNKDIRSITDGLQEGLKEQLLAGLTGSSRSLFMAALYEQTNRPLLVVVPNL
LHAQKVYEDLTSILNKNKVFLFPANELIAAELSIASPELRTQRIETLNYLATEEKGGVII
APISGIKKVLPPRSVWKESLIEWNVGDDLNIESVLENLISLGYSRTDMVSTPGEFSLRGG
ILDIYPLTEENPFRIELFDTEIDSIRIFSAEDQKSLQKVEKAFISPVNEIILNKGNVAKI
AEHLEAGLSQSLKRIKNADAQQRMVQQIEHEIEMLRSGNKFDHITQYMSLAYDKQASLLD
YIPTESIVIFDEISRIQEMGEQLDKEEAEYYTTLLDEGKIIHDITLSHSLSSLMSQHKYP
HIYMSLFLRHVPQTSPQNIVNISCKQMQDFHGQMNLFKAEVERWKKGKYTVVLMGADEER
VKRIERILEDYEVDASFVQNKDDIKIESLQIMEGQLLTGFELPMQRLALITEKELFNKRT
RKSARRQKMSNAERIKNYSELKPGDYVVHVNHGIGKFIGIETLEINGIHKDYLHIRYQGT
DKLYVPVDQIDLIQKYVGSEGKEPKMYKLGGNDWTRVKSKVQSTVQDIADDLIKLYAERE
TAKGYAFMPDGEMQKDFEASFPYKETEDQLRSIVEIKKDMERERPMDRLLCGDVGYGKTE
VAIRAVFKAVADGKQVAFLVPTTILAQQHYETMRERFQDFPINIGLLSRFRTRKQQNETI
KGLKNGTVDVVIGTHRILSKDIVYRDLGLLVVDEEQRFGVTHKEKIKQLKTNVDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNPMLAREAIEREMARGGQVYYLY
NRVEDIERRAEELSMLIPDAKIVTAHGKMTESELESVMYSFLEGEADVLVSTTIIETGVD
IPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRQDKVLTEVAERRLQAIKEF
TELGSGFKIAMRDLTIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIQERKGDTNKEVHN
LIEIDLKVDAYIPDSYISDGNQKIEMYKRFRSISTSEELDELQEEMLDRFGEFPQEVTYL
FKIAEIKVLAIRAGVELIKQTKDEVTIITSEKTSKEIDGHVLFRSASKFGRMVGLGMEAN
RLKMVLYVKKVPVQDWLNAAFELVSELERNKKVKEKTE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattgcagcaactacttacagataacaaagatattcgatccattacagatggg
ctacaggaaggtctgaaggaacaattattagccggtttaacaggttcttcgcgttctctc
tttatggcagcgctatatgaacaaacaaatcggccccttctagtggtggtaccgaatctt
ttacatgcccaaaaagtatatgaagacctaacgtcgattttaaataaaaataaagtattt
ctatttccagcaaatgaattgattgctgctgaattaagtattgccagtcctgaactgcgt
acacagagaatagaaacacttaattatcttgcaacagaggaaaaaggcggagttattatt
gctccgatttccggtattaaaaaggtgcttccacctcgttctgtttggaaggaatccttg
attgaatggaatgtgggcgatgatctgaatatcgagagcgtattggagaatttaatctcg
cttggatattcgagaacggatatggtatcgactccaggtgagttttctcttagaggcgga
atattggatatctatcctctgacagaagaaaaccctttccggattgaattgtttgataca
gagattgattccattcgtatattttcagctgaagatcaaaaatcgctacaaaaggtagaa
aaggcatttatcagcccggtcaatgaaattattttgaataagggcaatgtggctaaaata
gcagagcatttagaagccggcttaagccaatccttaaaaagaattaaaaatgcagatgca
caacagcggatggttcagcaaatcgagcatgaaattgaaatgcttagaagcgggaataag
tttgaccatatcactcaatatatgtcactggcctatgataaacaggctagtttgctagat
tatattccgacagagagtatcgtcatttttgatgaaatcagcagaattcaggagatgggt
gaacagctggataaagaagaggctgaatattatacaactctacttgatgaggggaaaatt
attcatgatattactctatctcattcactctcttcacttatgagtcaacataaatatccg
catatttatatgtcattgtttttaaggcatgtacctcaaacaagccctcaaaacatcgta
aatatcagctgcaagcaaatgcaggatttccatgggcagatgaatttatttaaagctgag
gtagaacgctggaaaaaaggaaaatacacagttgttcttatgggtgccgatgaggagcgg
gtcaagagaatagagcgtatcctagaggattacgaagtcgatgcaagctttgtacaaaat
aaagatgatattaagatagaatccctgcaaattatggaggggcagctactgactggattc
gagcttcctatgcagagactagcactcattacggagaaagaactgtttaataagcgaaca
agaaaatcagccagaaggcaaaaaatgtccaatgccgaacgtataaaaaattattcggaa
ttgaagcctggcgattatgttgtccatgtaaatcacgggatagggaagtttattggtatt
gaaacattagagattaatggaattcataaagattatcttcatattcgctatcagggaact
gataagctttatgtgccagtagatcaaattgacctgattcagaaatatgttggttcagaa
ggtaaagaacctaagatgtataagcttggcggtaatgattggacacgcgtaaaaagtaag
gttcaatcaacggtccaggatatagctgatgatctaatcaaattatatgcagaacgagag
accgcgaagggctatgcttttatgccggatggagaaatgcagaaggatttcgaagcctct
tttccatataaggaaacagaagatcagctgagatctattgttgaaatcaagaaggatatg
gaacgtgaacgtccaatggatcgtttactatgcggtgatgtaggatatgggaagactgag
gttgccattcgggcagtatttaaagctgttgctgatggtaaacaggttgcctttttagtg
ccaactaccattcttgcacagcagcactatgagaccatgcgtgaaaggtttcaggatttc
ccaatcaacatcggccttttaagtagattcagaacaagaaaacagcagaatgaaacaatt
aaaggtctaaaaaacggaacagttgatgtggttattggaacacatagaattttatctaag
gacatcgtttatcgagatcttggtttacttgttgtagatgaagagcaacgatttggtgta
acacataaagaaaaaattaaacaactaaaaacaaatgtagatgttctgactctgacagct
accccaataccaagaaccttgcatatgtccatgcttggtgtgagggatctttcagtaatt
gagacacctccggaaaatcgtttccctgtgcaaacctatgtaatggaatataatccgatg
ctagcacgggaggcaattgagcgggagatggcaagaggaggacaggtatactatctgtat
aaccgtgtagaagatattgaaagaagagctgaagagctgtcgatgctaatcccggatgcc
aaaatcgtgactgcgcatggaaaaatgacagaaagtgagcttgaatctgtcatgtacagt
ttccttgagggtgaggctgatgtgttggtaagtactaccataattgagactggagtggat
attcctaatgtaaatacactcatcgtttatgatgcagacaggatgggcttatcccagtta
tatcaactacggggaagggttggaagatccaatcgtgtagcatatgcgtattttacttat
cggcaggataaggtattgacagaggttgcagaaagaagattgcaggcaataaaggaattt
acagagttgggttcaggctttaaaatagcaatgagggatctgaccattcgaggtgcaggt
aatcttttgggtgcggagcagcatggctttatcgattctgttggatttgacctttattcc
caaatgctcaaagaggcaattcaggaacgaaaaggggataccaataaagaagtccataat
ctgattgaaattgatcttaaagtagatgcatatattccggattcttatatttctgacggc
aatcaaaaaatcgaaatgtacaaacgtttcagaagcatatcaacttctgaggaattggat
gaacttcaggaggaaatgcttgaccgatttggagaatttccacaagaagttacctacctg
tttaaaattgcagaaattaaagttcttgccattcgggcaggtgtagaattaattaaacaa
acaaaagatgaagttactattatcacctctgaaaaaacaagtaaagaaattgatggacat
gtattattcagatctgcttcaaagtttggtcgtatggtcggactgggtatggaggctaat
cgcttgaaaatggttctttacgtaaagaaagtaccggttcaggactggctcaatgctgcc
tttgaattagtttctgagttggaacgtaacaaaaaggttaaagaaaagactgaatag
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