Pradoshia sp. D12: F7984_01230
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Entry
F7984_01230 CDS
T06218
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prd
Pradoshia sp. D12
Pathway
prd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7984_01230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prd03019
]
F7984_01230
03009 Ribosome biogenesis [BR:
prd03009
]
F7984_01230
Enzymes [BR:
prd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F7984_01230
Messenger RNA biogenesis [BR:
prd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F7984_01230
Ribosome biogenesis [BR:
prd03009
]
Prokaryotic type
rRNA helicases
F7984_01230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QFK69995
UniProt:
A0A5J6XJ01
LinkDB
All DBs
Position
220721..222214
Genome browser
AA seq
497 aa
AA seq
DB search
MTLFSELGISSDTLRAVEGMGFEEATPIQSETIPLALQGGDLIGQAQTGTGKTAAFGIPM
IEKIDVKRDEIQGLIIAPTRELAIQVSEELYKIGAGNRSRVLAVYGGQDITRQIRALKKR
PHIIVGTPGRLLDHINRKTIRLNNVHTVVLDEADEMLNMGFIEDIESILSSVPDNHQTLL
FSATMPDPIRRIAERFMHEPKTVRVKAREMTVPAISQYYVRVPEREKFDALTRLIDIHTP
ELAIIFGRTKRRVDELAEALTVRGYTAEGIHGDLTQARRMSVLRKFKEGAVDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMAVTFVTPREMSYLEVVERTTK
KKMERIKAPTVTDALEGQQRTVKEKLYNVVSSEDLTAYLPLAKEMIEDHTAEELVAAALK
LFIREPDEKPVTISEERPLPFRKDGYKGGKGGGSKRPYNRGGDRDSRGGGDRRRSSSTNQ
GGRRKSYSNSKPKNTSK
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgacattatttagtgaattaggaattagcagcgacacattaagagcagtagaaggcatg
gggtttgaagaagcaactccaatccaatctgaaacgattccacttgcattgcagggtggg
gatttaatcggacaagctcaaacaggtactggtaaaactgctgcgtttggaattccgatg
attgaaaaaatcgatgtaaaaagagacgaaattcagggattaatcattgcaccgacacgt
gaacttgctattcaggtttctgaagagctttacaaaatcggagcaggcaaccgttcccgc
gttctggcagtatatggcggtcaggatataactcgtcaaatccgtgcgttaaaaaaacgt
ccgcatatcatcgtgggtacaccaggcagactgttggatcatattaacagaaaaacaatt
cgtttgaacaatgttcatactgtagttcttgatgaagcagatgaaatgttgaacatggga
ttcattgaagatattgaatctattctatcttctgttccagataatcaccaaactctattg
ttctctgcaactatgcctgatccaattcgtcgtatagccgaaagattcatgcatgaacca
aaaacagttcgtgtaaaagcgagagaaatgactgtaccggcaatcagccaatattatgta
cgtgttccggaaagagaaaaattcgatgcattaactcgtctaattgatatccatacgccg
gaattagctattatatttggccgtactaaacgtcgtgttgatgaattagcagaagcatta
acagtacgtggttatacagctgaaggaatccatggtgatttgacacaagcacgtcgtatg
tcagtcttacgcaagtttaaagagggagcagtcgatatattggtagctacggatgtggct
gcacgtggtcttgatatttccggtgttactcatgtttataactttgatattcctcaggat
cctgaaagttatgttcaccgtattggacgtacaggaagagcgggtaaagaaggtatggca
gttacattcgtaactccacgtgaaatgtcttatcttgaagtggttgaacgcaccactaaa
aagaaaatggagcgtataaaagctccaactgttacagatgcgcttgaaggacagcaaaga
actgtaaaagaaaaattgtacaatgttgtttcttctgaggacttaacggcatatcttccg
ttggctaaagaaatgatagaagatcatactgcagaggaattagttgctgcagcattgaaa
ttgttcattagagagccggatgaaaagcctgtaaccatctcagaagagagaccacttcca
ttccgcaaagatggctataaaggcggaaaaggtggcggaagcaaacgtccatataacaga
ggcggagacagagatagccgtggtggcggagacagaagacgcagcagcagcaccaatcaa
ggtggacgcagaaagtcttactcaaactctaaaccaaaaaacacaagtaaataa
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