Pradoshia sp. D12: F7984_13440
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Entry
F7984_13440 CDS
T06218
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prd
Pradoshia sp. D12
Pathway
prd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7984_13440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prd03019
]
F7984_13440
03009 Ribosome biogenesis [BR:
prd03009
]
F7984_13440
Enzymes [BR:
prd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F7984_13440
Messenger RNA biogenesis [BR:
prd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F7984_13440
Ribosome biogenesis [BR:
prd03009
]
Prokaryotic type
rRNA helicases
F7984_13440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
AAA_19
NAT10_TcmA_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QFK72169
LinkDB
All DBs
Position
complement(2807013..2808455)
Genome browser
AA seq
480 aa
AA seq
DB search
MTEHSFNDFNISPEIIRALSKMNYFQPTEVQQKVIPIAIGNQDLIVKAQTGSGKTAAYGI
PICHHIEWIENKPQALILTPTRELAAQVKEDLTNIGRFKRIKAAAVYGKQSFAKQQLELK
QKNHIVVGTPGRVLDHIQKGTLNVDELRYLVIDEADEMLNMGFIDQVEAIINELPKERIS
MLFSATLPDDIQNLSNQYLKEPIFIEINKKEMTTQLIEHSYYRVKHEKKAELLRKVTTIE
NADSCIVFCRTQEQVNNLFDTLVKWEYSCGKIHGGMYQEDRFDVMNQFKRGEFRYLIATD
VAARGIDIENITHVLNYDFPVEKESYVHRTGRTGRAGHTGVAISFVTPFDEELLRETEEY
IGFAIQVKEEPTEAEVEKCRPNFESKMFENEIKEDKTTELNSGIMKLFFNGGKKKKLRAV
DFVGTIAKIEGISAEDIGIITIQDQATFVEILNNKGPIVLQAMKNKTVKGKKLKVYEAFE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacatagcttcaatgattttaacataagtcccgaaattattcgggcattaagt
aaaatgaattattttcaaccgacagaggtccagcaaaaggtgattccaattgcgattggt
aatcaggatcttatcgtaaaagcacaaactggcagtgggaaaacagctgcgtatggaatc
ccgatttgccatcatatagagtggattgaaaataagcctcaggcacttatcctaaccccg
accagagaattggctgcgcaggtgaaggaagatttaacgaatattggccgatttaagcgg
attaaagcagctgctgtttatggaaagcaatcatttgctaagcagcagctggagcttaag
caaaaaaatcatattgttgttggaacacctggaagagtgttggatcacattcaaaaaggt
acattaaatgttgatgaacttcgctatttggtaattgatgaagcagatgaaatgttgaat
atgggctttattgatcaggttgaagccattataaatgaattacctaaggaacgaatcagc
atgctgttttcagcaacattgccggatgatattcaaaacctatccaatcaatatttaaaa
gaaccaatctttattgaaattaacaaaaaagagatgacgactcagttgatcgaacactct
tattatagggtcaagcatgaaaagaaagcggagctgctaaggaaagttacgacgatagag
aatgcggatagctgcatcgttttttgccgcacacaggaacaggtaaacaatctgtttgat
acattggttaaatgggagtattcatgcggtaaaattcatggtggaatgtatcaagaggac
cgcttcgatgttatgaatcaatttaaacggggtgagtttcgatatttaattgccacggat
gtcgctgcgcgcggaattgatattgaaaatattacacatgtcttgaattacgattttcca
gtggaaaaggaatcctatgtacataggacgggaagaacgggccgtgcgggacatacggga
gtagccatttcttttgtaactccttttgatgaagaattattgagagagacagaagaatat
ataggctttgctattcaggtaaaagaggagccaactgaagcagaagtagaaaaatgcagg
ccgaatttcgaatcaaaaatgttcgaaaatgagataaaggaagataaaacgaccgaatta
aacagtggaattatgaagctgtttttcaatggcggcaagaaaaagaaattgagagctgtc
gattttgtggggacaattgcaaaaattgaaggcatatctgctgaagacattggaattatc
acaattcaagaccaggctacatttgttgaaatattgaacaataaaggtccaatcgtctta
caggctatgaagaataaaactgttaaaggaaagaaattaaaggtatatgaggcatttgaa
taa
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