Pradoshia sp. D12: F7984_14145
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Entry
F7984_14145 CDS
T06218
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
prd
Pradoshia sp. D12
Pathway
prd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
F7984_14145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prd03400
]
F7984_14145
Enzymes [BR:
prd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
F7984_14145
DNA repair and recombination proteins [BR:
prd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F7984_14145
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
AAA_22
UvrD-helicase
HHH_5
AAA_16
T2SSE
AAA_12
nSTAND3
AAA
NPHP3_N
AAA_28
UvrD_C
NTPase_1
ABC_tran
AAA_17
TsaE
AAA_18
Motif
Other DBs
NCBI-ProteinID:
QFK72302
LinkDB
All DBs
Position
complement(2942015..2944450)
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AA seq
811 aa
AA seq
DB search
MLLVEQESFVFSDNDKPFIKGTHLVTIFHNEQNLYSVVRIRVKETNLNYDEKEAVITGYF
PPIHEEEIYTFYGKMKEHPRFGIQFHVDTFQREVPESKEGVIAYLSGSLFKGIGKKIAES
IVEKLGEKAISKILANPSLLDQIPKLSGEKAKQLYDTLAANQGLEQIMINLSSLGFGPQL
SMKIYQAYKEDTISIIEQNPYQLVETIEGIGFTRADEIGLQLGIGGSHPSRIKAAILYTL
DRSCVQDGHSYTEAEELLISVKTLLEQNQNVTITFEQITESLIQLGEEGKIIGEEKRFYM
PSLYFSEKGIVTNIKRIMSQDSYADQFPESEFLLELGKLEERIGMEYAEEQKDAIFKALH
SPMLILTGGPGTGKTTVIKGIVELYSELHGLSLNPKDYNNENPFPFVLAAPTGRAAKRMK
ESTGLPAVTIHRLLGWNGSDVQRDEDNPISGRLLIVDEMSMVDIWLANQLFKALPNDMQV
ILVGDEDQLPSVGPGQVLKDLLASSVIPVTRLESIFRQEDGSSIIQLAHAIKNGQLPPDI
RKPQGDRSFFSCSTNQVADVIRQVVTNARQKGFPARDIQVLAPMYRGSAGIDSLNVLLQG
ILNDNRDKKKRELTFGDVVYRVGDKVLQLVNQPENGIYNGDMGEIIAIIYAKENEDKQDQ
IFVSFDGIEAKYTRQELNQITHAYCCSIHKSQGSEFPIVILPVVKSYHRMLRRNLIYTAI
TRSKQFLIVCGEEEALRYGVGRSGEEERRTTLLEKLQEGFRDKELISKPENPVTENESSN
EDGLTYEQKIFQTDPMIGMENITPYDFMIRG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgcttcttgtggaacaagagtcgttcgtcttctccgacaatgacaaacctttcatcaaa
ggaacacatttggttaccatttttcataatgaacaaaatttatactcggttgtacgaatc
agagtgaaagaaacgaatttgaattacgatgaaaaagaagctgttattaccgggtatttc
ccccctattcatgaggaagaaatatacacgttttatgggaaaatgaaagaacatccccgt
tttgggattcaatttcatgtagataccttccagcgtgaagttcctgaatcaaaggagggt
gtgattgcttatttatccggatctctttttaaagggattggtaaaaagattgcagaatcg
attgtcgaaaaacttggcgaaaaggcaatctccaaaattttagcgaatccatcattgctc
gatcaaattcctaagctaagcggtgaaaaggcaaagcaattgtatgatactctggcagcc
aatcagggcctggagcaaatcatgattaatttatccagcctggggtttggacctcagctg
tcgatgaaaatttatcaggcttataaagaggacacgatttccatcattgagcaaaatcca
taccagctagtcgaaacgattgagggaattggatttactcgcgcagatgaaatcggactg
cagctcggcattggaggaagccatccatccaggattaaggcagcgattctctatacactt
gacagatcttgtgtacaggacgggcattcgtataccgaggctgaggaactgttgatcagc
gtaaaaactctcttggaacaaaatcaaaatgtgaccatcacttttgagcaaattacggaa
tcacttatccaactcggtgaagagggaaaaatcattggagaagagaaaaggttttatatg
ccgtccctctacttttctgaaaaagggattgtaacgaatattaaacggattatgtctcag
gactcatatgccgatcaatttcctgaatctgaatttttattggagctaggcaaactagaa
gagcgaattgggatggagtacgctgaggagcaaaaggatgcaatctttaaagccttacat
tctccgatgctgatcctgacaggaggtcctggtaccggtaaaacaaccgttattaaagga
atcgttgaattatattcagaattacatggtttgtcccttaatccaaaagattataataat
gaaaatccatttccatttgttttagcagctccaacaggacgcgcggcaaaaaggatgaag
gaatccacagggcttcccgccgtaactatccaccgtttattgggctggaatgggtcggat
gttcagcgtgatgaagataatccaatcagcggaaggcttttaattgtagatgagatgtct
atggtagacatttggctggccaatcagctttttaaagcattgccgaatgatatgcaagtc
atcctcgttggtgatgaggatcagttgccttcagttggaccaggtcaggtattgaaggat
ttacttgcctcttccgttattcctgtaacccgtctggaatcgatattcagacaggaagat
ggttcttccattattcagctcgcgcatgcgataaaaaacggacagctgccgccagatatt
cggaaaccgcagggcgatcgttcatttttctcttgttccactaatcaagtagcagatgtg
attaggcaggttgtaaccaatgcccgccaaaaagggttcccagcccgtgatattcaggtt
ttggctccaatgtacagagggagtgccggaattgattccctcaatgtcctcctgcagggc
attcttaatgataatcgcgataagaagaaaagggaattgacttttggggatgtggtttat
cgggttggagataaggttctccaattagtgaatcagcctgaaaatgggatttacaatggt
gatatgggtgaaattattgcgattatctatgcaaaggaaaatgaagataagcaggatcag
atttttgtttcatttgatggcattgaagcgaagtatacacgccaggagctcaatcaaata
actcatgcttattgttgttccattcataaatcccagggaagtgaattcccaatcgtcata
ttgccagttgttaagagctatcaccgcatgctaaggaggaacttaatttacacggctata
acaaggagcaaacagttcctgattgtatgcggtgaagaggaagccttacgatacggcgtc
ggtcgcagtggtgaggaggaacggcgaacaactctacttgaaaaactgcaggaagggttc
cgtgataaggaacttatctccaaacctgaaaatccagttactgaaaatgaaagttccaat
gaagacggcttgacgtatgagcaaaaaatattccaaacagatccaatgattgggatggaa
aacattacgccttatgattttatgatacgcggttaa
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