Pseudomonas resinovorans: PCA10_38010
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Entry
PCA10_38010 CDS
T02708
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pre
Pseudomonas resinovorans
Pathway
pre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCA10_38010 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pre03019
]
PCA10_38010 (rne)
03009 Ribosome biogenesis [BR:
pre03009
]
PCA10_38010 (rne)
Enzymes [BR:
pre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PCA10_38010 (rne)
Messenger RNA biogenesis [BR:
pre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PCA10_38010 (rne)
Ribosome biogenesis [BR:
pre03009
]
Prokaryotic type
rRNA processing factors
PCA10_38010 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAN49533
UniProt:
S6ATV5
LinkDB
All DBs
Position
4167325..4170447
Genome browser
AA seq
1040 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGAE
RHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLDAPADMGLIVRTAGLGRSSEELQWDLD
YLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAHEEALSFIR
QVMPQYQSKIKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREA
LEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCDGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEVQSSQSSYEMTPAEAEEIQPVSSTRTLVRQEAAVKTVSPERPVPAPVPAAPL
APPTPAPEPSLFKGLVKSLVGLFAGKEEPKVEAEKPATERQPRGEERRNSRQQNRRRDGR
EGREGREGRRDEERKPREERQPREAREGQEGRRERPAREERQPREERQPREERQPREPRE
ERQPREERQPREERQPREERQPRESREERQPREERQPREAREGQEGRRERGERAERPARE
ERQPREERQPREERQPRAEMAAAEVVDEELLNNEELLDDDQEGADGERPRRRSRGQRRRS
NRRERQREANGDEIVEGQEGQEEAEQASPAEAVQVAAVAATAVVATEVLAESTQEAPAQA
DSQVVEAVVVETEVVEAQVAEAVVVPAEETAPVAEQAQVVEQAPIEFDAPQVVEAAPVEA
VVEAPVAAPVVEAPIAEVVAESAEVAPAPAVVSGGRAANDPREVRRRQREAERLAKEANE
SATKAVEAVAAAEPVSAAAHAIAGVEEEVVAAEQQVEAAVEQVVEAPAEQTEQTEQLAEA
TETKAEEEKDEAKDETKPVV
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcgactcagcccgaagagttgcgtgttgcactggtcgacggccaacgc
ctgtacgacctggacattgaatcgggtgcccgcgagcagaagaaagccaacatctacaag
ggccggatcactcgcatcgaacccagcctcgaagccgcattcgtcgactttggcgccgag
cgccatggcttcctgcccctcaaggaaatctcccgagaatacttcaagaagtctcctgaa
ggtcgcatcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtccaggtcgag
aaagaagagcgtggcaacaagggcgctgccctgaccaccttcatcagcctcgccggccgt
tacctggtactgatgccgaacaacccccgcgccggtggcatctcccgccgcatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggcctcgacgccccggccgacatgggc
ctgatcgtgcgcaccgcgggcctgggccgttccagcgaagagctgcaatgggacctggac
tacctgctgcaactctggagcgccatcaaggaagcttccggtgagcgtggcgcccccttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctggtcgacagcgtcgaagcccacgaagaagccctcagcttcattcgc
caggtgatgccgcagtaccagagcaagatcaagctgtaccaggacagcgttccgctgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgtgaagtgaagctgccg
tccggcggctccatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gctcgcgcgaccaagggtggcgacatcgaggaaaccgcactgcagaccaacctggaagcg
gctgaggaaatcgcccgccagctgcgcctgcgtgacatcggtggcctgatcgtcatcgac
ttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaagtccgcgaagcc
ctggaagccgaccgcgcccgcgtgcagatcggtcgcatctcccgcttcggcctgctggaa
atgtcccgtcagcgcctgcgtccgtccctcggcgagaccagcggcatcgtctgcccccgt
tgcgacggccagggcatcatccgtgacgtcgaatccctctctctggccatcctgcgcctg
atcgaggaagaagccctcaaggaccgcaccgccgaagttcgcgcccaggtaccgatcccg
gttgccgccttcctgctcaacgagaagcgcaacagcatcaccaagatcgagctgcgcacc
cgtgcgcgcatcgtcatcctgccgaacgaccacctggaaactccgcacttcgaagtccag
cgcctgcgcgacgacagcccggaagtacagagcagccagtccagctacgaaatgaccccg
gccgaagctgaagaaatccagccggtcagctccacccgcaccctggttcgccaggaagcc
gcggtgaagaccgtttctcccgagcgtcccgttccggcaccggttccggccgccccgctg
gcaccgcccaccccggctccggaacccagcctgttcaagggcctggtgaagtccctggta
ggcctgttcgccggcaaggaagaacccaaggtcgaagccgagaagcccgctaccgagcgc
cagccgcgcggtgaagagcgtcgcaacagccgccagcagaaccgtcgccgtgacggccgc
gaaggtcgtgagggccgtgaaggccgccgcgacgaagagcgcaagccgcgtgaagagcgc
cagccgcgcgaagcccgcgaaggccaggaaggtcgtcgcgagcgtccggcccgtgaagaa
cgccagccgcgcgaagagcgtcagccccgtgaggagcgccagccgcgcgaaccgcgtgaa
gagcgccagccgcgtgaggaacgtcagcctcgcgaagagcgtcagccccgtgaggagcgt
cagccccgtgaatcgcgcgaagagcgccagccacgtgaagagcgccagccgcgcgaagcc
cgtgaaggccaggaaggtcgtcgcgagcgtggcgaacgcgctgagcgtccggcccgcgaa
gaacgccagccccgtgaagagcgtcagcctcgcgaagaacgccagccacgtgccgaaatg
gccgcggccgaggtggtcgacgaagagctgctgaacaacgaagagctgctggacgacgat
caggaaggcgccgatggcgaacgtcctcgccgccgctcccgtggccagcgccgccgcagc
aaccgccgcgagcgtcagcgtgaagccaacggcgacgagatcgtcgaaggtcaggaaggc
caggaagaagccgagcaggcctctcccgctgaagccgtccaggtcgctgccgtagccgct
actgctgtagtcgccaccgaagtgctggccgaatcgacccaggaagcgccggcccaggcc
gattcccaggttgtggaagccgtggttgtcgaaaccgaggttgtcgaagctcaggttgcc
gaagccgtcgtagttccggccgaggaaaccgctccggtcgccgagcaggctcaagtggtc
gagcaggctccgatcgagttcgacgcaccccaggttgtcgaagccgctccggttgaagcc
gtggtcgaagcacctgttgccgctccggtagtggaagccccgatcgctgaagtcgtcgcc
gaatcggcagaagtggctccggcccccgctgtcgtcagtggcggtcgcgctgccaacgac
ccgcgtgaagtgcgccgtcgtcagcgtgaagccgagcgcctggccaaggaagccaatgag
tccgctaccaaggccgtcgaagccgtagccgccgccgagccggtctccgctgccgcccac
gccatcgccggcgtggaagaggaagtggttgccgccgagcagcaggtcgaagctgccgtt
gaacaggttgtcgaggctccggccgagcaaaccgagcaaaccgagcaactggccgaagcg
accgagaccaaggccgaagaagagaaggacgaagccaaggacgagaccaaaccggtcgtc
tga
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