Metapseudomonas resinovorans: PCA10_41580
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Entry
PCA10_41580 CDS
T02708
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pre
Metapseudomonas resinovorans
Brite
KEGG Orthology (KO) [BR:
pre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pre03019
]
PCA10_41580 (hrpA)
Enzymes [BR:
pre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PCA10_41580 (hrpA)
Messenger RNA biogenesis [BR:
pre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PCA10_41580 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
APHB_HrpA
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_25
NACHT
T2SSE
ABC_tran
nSTAND_NTPase5
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
BAN49890
UniProt:
S6AM29
LinkDB
All DBs
Position
complement(4571565..4575590)
Genome browser
AA seq
1341 aa
AA seq
DB search
MSEQSPSPEQLLQRIDQAMGADRHRLRRQLHELHKHPDAGKLAQWAERFQASIARVEARR
ASVPVMRYDDALPIAAKRDEIKAALAKHQVLVIAGETGSGKTTQLPKICLEIGRGTHGLI
GHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSNERSLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFGDAP
IIEVSGRTYPVDTWYRPLAAEVDEDGEALFDDLSVDQGILRALDEIAAHEREVGKRPGDV
LVFLPGEREIRDCAEVLRKANLRHTEVLPLYARLTPAEQQKIFAPMPGRKIVLSTNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPVEAVSQASANQRKGRCGRVEPGICVRLYS
EEDFISRPTFTDPEILRTNLAAVILQMLHLRLGDIEAFPFIEPPDGKAIKDGFTLLQELS
AVNRESQLTPIGRQLARLPIDPRLGRMVLEGARQGSLDEVLVITAALSVQDPRERPMDRQ
QAADQAHAQWKDVDSDFAALINLWRGFEEQRQALGSNALRNWCRKNFLNYLRLREWRDAH
RQLVLICRELKLFPERSKDTPEGGDGRRSAQRHPAKSNAAEAPRDAAAKAEQQARNIDYA
KVHKAVLCGLLSQIGQKTEEGDYLGARQRRFWIHPGTAIAKKRPQWLMTAELVETTKLFA
RMVAKIDPDWLEPLAGHLVKKNYLEPHWEKRRGQVVAFEQITLYGLIIVGRRAVHYGPIE
PEVARELFIREGLVRGEIHSKAKCLTANRQLLERLDELEAKARRRDILADEETLFAYYAA
RLPADIYQTASFEKWYERERAQNPNLLIMREEDVLAREASEVTAAQYPDTLRLGDLQLPL
SYHFEPGHPRDGVTLRVPAPLLPQLPAERLEWLVPGLLETKCVALVRNLPKAIRKNFVPV
PDFVKAALDKLAFAQGSLPENLGRELQRMTGARVPEEAWSEAAAQLEGHLKMNLEVVDAR
GKFLGEGRDLAEITARFAEASQAALAIPQAQKEQKPVEAKGFAQVAASTQQKVAGLSMTV
YPALVEEGGAVKESRFPTQAEADWQHRRALQRLLLQQLADTAKFLRGKLPGLTELGLLYR
DLGRVDALVEDILLASLDACILEGEASLPRDGAALASLAEKKRGAWAEHAERLARLTLDI
LKLWHALQKRFKGRIDLAQAVALNDIKAQLGNLVYPGFVRETPAEWLKELPRYLKAIEQR
FDKIAAQLQRDRVWSGELAGYWEQYQARLAKHAQEGKRDPELVLYRWMLEEYRVSLFAQQ
LGTRMAVSDKRLNKQWSQVEA
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaatcccccagccccgaacaactcctgcaacgcatcgaccaggccatgggc
gccgaccgccatcgcctgcgccggcagctccacgagctgcacaagcaccccgacgcgggc
aagctggcgcagtgggccgagcgtttccaggcctcgatcgcgcgggtcgaggcgcgccgc
gccagcgtgccggtgatgcgctacgacgacgccctgcccatcgccgccaagcgcgacgag
atcaaggcggcgctggcgaagcaccaggtgctggtgatcgctggcgagaccggctcgggc
aagaccacccagctgccgaagatctgcctggagatcggccggggtacccatggcctcatc
ggccacacccagccgcgccgactggcggcgcgcagcgtggccacgcgggtggcggaagag
atcggtacgcccctgggcgagctggtgggctaccaggtgcgcttcgaggaccagtccaac
gaacgcagcctgatcaagctgatgaccgacggcatcctgctggccgagacccagcacgac
cgtttcctcgaacgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctgaac
atcgacttcctgctgggctacctcaagaccctgctgccgcgccgccccgatctcaagctg
atcatcacctcggcgaccatcgacctggagcgtttctcgaagcacttcggtgacgcgccg
atcatcgaggtctccggccgcacctacccggtggacacctggtaccggccgctggccgcc
gaggtggacgaggacggcgaggcgctgttcgacgacctttccgtggaccagggcatcctc
cgcgccctggacgagatcgccgcccatgagcgcgaggtgggcaagcgccctggcgacgtg
ctggtgttcctccccggcgagcgggaaatccgcgactgcgccgaggtgctgcgcaaggcc
aacctgcgccacaccgaggtcctgccgctctatgcacgcctgacgccggccgagcagcag
aagatcttcgcgcccatgccggggcgcaagatagtgctgtccaccaacgtcgccgaaacc
tcgctgacggtgccgggcatccgctatgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctaccgcgccaaggtccagcgcctgccggtggaagccgtgtcccaggccagcgcc
aaccagcgcaagggccgctgtggccgggtcgaaccgggtatctgcgtgcgcctctacagc
gaagaggacttcatctcccggccgaccttcaccgatccggagatcctgcgcaccaacctg
gcggcggtgatcctgcagatgctccacctgcgcctgggcgacatcgaggccttccccttc
atcgaaccgccggatggcaaggcgatcaaggacggcttcaccctgctgcaggaactctcg
gcggtgaaccgcgagagccagctcacccccatcggtcgccagctggcgcgcctgcccatc
gacccgcgcctcggccgcatggtgctggaaggcgcgcgccagggcagcctcgacgaagtg
ctggtgatcaccgccgcgctgtcggtgcaggacccgcgcgagcggcccatggaccgccag
caggccgccgaccaggcccacgcccagtggaaggacgtggattccgacttcgccgcgctg
atcaacctctggcgcggcttcgaggagcaacgccaggcgctcggctccaacgccctgcgc
aactggtgccggaagaacttcctcaactacctgcgcctgcgcgagtggcgcgacgcccac
cgccagctggtgctgatctgccgcgaactgaaactgttcccggagcggagcaaggacacg
cccgagggaggggacgggcggcgctccgctcagcgccatcctgcgaagagcaacgccgcc
gaagctccgcgcgatgccgccgccaaggccgagcagcaggcgcgcaacatcgactacgcc
aaggtgcacaaggcggtcctctgcggcctgctcagccagatcggccagaagaccgaggag
ggcgactacctcggcgcgcgccagcggcgcttctggatccatcccggcacggccatcgcc
aagaagcgcccacagtggctgatgaccgccgaactggtggaaaccaccaagctgttcgcg
cgcatggtggcgaagatcgaccccgactggctggagcccctggccggccacctggtgaag
aagaactacctcgaaccccactgggagaaacgccgtggccaggtggtggccttcgagcag
atcaccctctacggcctgatcatcgtcggccgccgcgccgtgcactacggccccatcgag
ccggaggtggcccgcgagctgttcatccgcgaaggcctggtgcgcggcgaaatccacagc
aaggcgaaatgcctcacggccaaccgccagttgctggaacggctcgacgaactggaagcc
aaggcacgccgccgcgacatcctggccgatgaggaaaccctcttcgcctactacgcggcg
cgcctgccggcggacatctaccagaccgccagcttcgagaagtggtacgagcgcgaacgg
gcgcagaaccccaacctgctgatcatgcgcgaagaagacgtgctggcccgcgaggccagc
gaggtcaccgccgcgcagtacccggacaccctgcgtctgggcgacctgcaactgccgctg
agctatcacttcgagccgggccacccgcgcgacggcgtgaccctgcgggtgcccgcgcca
ctgctgccgcaactgccggccgagcgcctcgagtggctggtgccgggcctgctggaaacc
aagtgcgtggccctggtgcgcaacctgcccaaggcgatccgcaagaacttcgtgccggtg
ccggacttcgtcaaggcggcgctggacaagctggcgttcgcccagggttcgctgcccgag
aacctcggtcgcgagctgcagcgcatgaccggtgcccgcgtgcccgaggaggcctggagc
gaggccgccgcccagctcgaaggccacctgaagatgaacctggaagtggtggacgcccgc
ggcaagttcctcggcgaaggccgcgacctggccgagatcaccgcgcgcttcgccgaggcc
agccaggccgcgctggccatcccccaggcgcagaaggaacagaaaccggtagaggccaag
ggcttcgcccaggtggcggcgagcacccagcagaaggtcgccggcctatccatgaccgtc
tacccggcgctggtggaggagggcggggcggtcaaggaaagccgcttcccgacccaggcc
gaggccgactggcagcatcgccgtgccctgcaacgcctgctgctgcagcaactggccgat
accgccaagttcctccgcggcaagctgccgggcctgaccgagctgggcctgctgtaccgc
gacctcgggcgggtcgacgccctggtggaggacatcctcctggccagcctggatgcctgc
atcctcgagggtgaagccagcctgccccgcgatggcgcggcactggcgtccctggccgag
aagaagcgcggcgcctgggccgagcacgccgaacgcctggcgcgcctgaccctggacatc
ctcaagctctggcatgccctgcagaagcgcttcaaggggcgcatcgacctggcccaggcc
gtggccctgaacgacatcaaggcgcagttgggcaacctggtctatccgggcttcgtccgc
gagacgccggccgaatggctgaaggaactgccgcgctacctcaaggccatcgagcagcgt
ttcgacaagatcgccgcgcagttgcagcgcgaccgtgtctggtcgggcgagctggccggc
tactgggagcaataccaggcgcgcctggccaagcatgcccaggaaggcaagcgcgatccg
gagctggtgctctaccgctggatgctggaggagtaccgcgtgtcgctgttcgcccagcag
ctcggtacgcgcatggcggtatccgacaagcgcctgaacaagcaatggagccaagtggaa
gcctga
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integrated database retrieval system
