Plasmodium reichenowi: PRSY57_0600700
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Entry
PRSY57_0600700 CDS
T08079
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
prei
Plasmodium reichenowi
Pathway
prei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRSY57_0600700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prei03019
]
PRSY57_0600700
03041 Spliceosome [BR:
prei03041
]
PRSY57_0600700
03009 Ribosome biogenesis [BR:
prei03009
]
PRSY57_0600700
03016 Transfer RNA biogenesis [BR:
prei03016
]
PRSY57_0600700
Enzymes [BR:
prei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PRSY57_0600700
Messenger RNA biogenesis [BR:
prei03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PRSY57_0600700
Spliceosome [BR:
prei03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PRSY57_0600700
Complex C
U4/U6.U5 tri-SnRNP related factors
PRSY57_0600700
Ribosome biogenesis [BR:
prei03009
]
Eukaryotic type
Pre-60S particles
Helicases
PRSY57_0600700
Transfer RNA biogenesis [BR:
prei03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PRSY57_0600700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
24529962
NCBI-ProteinID:
XP_012761837
UniProt:
A0A151LP16
LinkDB
All DBs
Position
6:26057..30273
Genome browser
AA seq
1368 aa
AA seq
DB search
MSNNIDDLFDVFEENEIPEIISIKDEEQQEEKKIHIIKNDNEIITSTNNSKNEDEEEETQ
KHINKQNNNINNIDKDDVNKDNVGNHKNENLYKDINIENYKINVEYLIKNKKAEENIKKQ
IQEEIYSDIQNFDKTNKNVNKIRKLSIQENNNINNNHMNGKNININININNNMNEDNLTG
EAYPIHDSSTQENNKIRNKLIVEETIIENSKTINNDDVLVLEEFGGDVNCIHKCVRPQSY
VHNEIKEPLIPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRD
KQRVIYTSPIKALSNQKYRDLGEEFKDVGLITGDISINPEASIIVMTTEILRSMLYRGSS
LTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKS
QACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKDFKKDNFIKAVNVIKEKMNTSEENH
HQQHINKYTKKMRKTTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSDT
EKEVIKELYENAIRILADDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESL
LKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSGEYIQMAGRAGRRGLDDRGIV
IIMLDTPLHWREAHKLFVGEANRLVSQFHLGYNMILNLLRIEGITPEFMIERSFIQYQMK
KNLSQKILAKKKVEEHIKQIFNHLTNIHLDENNNEITKDELLTKIMFNNYEQIKNNQNLG
ASSELKIKDTSSNNEVILNADKHKEIKEEFKEEYTNYSSYSTQHYNENVINKELINYSTI
FSCISNFYTMKQKLIDVGETYRYILTMKKHITPYLSLGRLLYIIQEDLRWGWCICIEGQL
IEHKKANDHQKNKHNSNNNNINNNNSGDHNDLKQAKSEQETLFVECLVPCNHNIKRKLTI
NDDDDDNINHNNNNNYSYGEDNINKTYYDDKEYQPASDRSKARWKVISFNIKCVYQLSAV
VLSIDKPFDKKNEEQIENIKTKYNTMVTCLKGEKNIPVINPNQMGIKNETFISIVKNLKF
HENIINKNKLLNNKNLNKYYQMYSKYVALQCEKNVLESNIEKCRFIVLKKELKNMLVLLE
SLNYIEVSYNLENLKNEKDIKTIENSITEHIKKERIMNIKNETSKNNHEEKNYVVTMKGQ
IASAILSVDELVISELFFSNFFSKYNYDYICAFLSCFVYDESTSKEITINDPILVEGYQQ
IIKTANHVATKMNECGMNINLKDYIDKFKSAIMPIALLWARGHSFVEILSDSQIYEGSII
RTLRRLDELIRQMICAFRGINNDSMCETLTLATNKLRRGIPFSPSLYL
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaatattgatgatttatttgatgtttttgaagaaaatgaaataccagaaatt
atttcaataaaagatgaagaacaacaagaagaaaaaaaaatccatatcataaaaaatgac
aacgaaattataacttcaactaataatagtaaaaatgaagacgaagaagaagaaacacaa
aaacatataaataaacaaaacaacaatattaacaatatagataaagatgatgtaaataaa
gataatgtaggaaatcataaaaacgaaaatctttataaagatataaatattgaaaattat
aaaattaatgtagaatatttaattaagaataaaaaagccgaagaaaatataaaaaaacaa
atacaagaagaaatatatagtgatatacaaaattttgataaaacaaataaaaatgtaaac
aaaataaggaaattatccattcaagaaaataataatataaataataatcatatgaacgga
aaaaatattaatattaatattaatattaataataatatgaatgaagataatctaacgggg
gaagcatacccaatccatgatagtagtactcaagaaaataataaaataagaaataaatta
attgtagaagaaacgataattgaaaatagtaagactataaataatgatgatgttctagta
ttagaagaatttggaggggatgttaattgtattcataaatgtgttagacctcaaagttat
gtacacaatgaaattaaagaacctttaattccagctaggacatataaatttgaattagat
acttttcaaaaaaaatctatagaatgtctagaaagaaatgaaagtgtattagtatcagct
catacttcagcaggaaaaaccgtaatagcagaatatgccattgctttaggacttcgagat
aaacaaagagttatttatactagtccaattaaagccttaagtaatcaaaaatatagagat
ttaggtgaagaatttaaagatgtagggctaataacaggagatatctctattaaccctgaa
gcctcaattattgttatgacaaccgaaattttaagatcaatgttatatcgtggttcctct
ttaacaaaagaagtgaaatgggttatatttgatgaaatacattatatgagagatagagat
agaggtgttatctgggaagagactattattcttttacctttaatggttagattcattttt
ttaagtgcaaccatacctaacggtattcaatttgctgaatgggtgagtagcattaaaagt
caagcttgtcatattgtgtatacagactatcgacctacacctttacaacattatatatat
ccaacatctagtgaaagtgtatttttaatatgtgatgaaaataaagattttaaaaaagat
aattttataaaggctgtgaatgtaattaaagaaaaaatgaacacatcagaagagaatcat
caccaacaacatataaataaatatacaaaaaaaatgagaaaaacaacatatgatatagaa
aaaattgttcaaatgtgtcattctagaaattatactcctttaattatttttgcattttct
aaaaaagaatgtgaagttaatgcgacagctatgcataaaatagatttaaccagtgataca
gaaaaagaagttataaaagaattatatgaaaatgctatacgcatattagcagatgatgat
agatcccttccacaagttcaatttattttacctttacttttaagaggtataggtatacat
catggtgggttattacctataattaaagaaatcatagaaattatgtttcaagaatcatta
ttaaaagtgttatttagtactgaaacattttctatgggtattaatatgccagcaaaaaca
gttgtatttacatcattaacaaaatttgatggattagaaaaaagattaataacatcagga
gaatatattcaaatggcaggaagagcaggaagaagaggattagatgatagaggtattgtt
attattatgttagatacacctttacattggagagaagctcataaattatttgttggagaa
gctaatagattagttagtcaatttcatctaggttataatatgatcttaaatttattacga
attgaaggcattactcctgaattcatgattgaaagatcgtttatacaatatcaaatgaaa
aaaaacctttctcaaaaaatactagccaaaaaaaaagtagaagaacatattaaacaaatt
tttaatcatttaacaaatattcatttagacgaaaataataatgaaattactaaagatgaa
ttacttacaaaaattatgtttaataattatgagcaaattaaaaataatcaaaacttaggt
gcttcatcagaattgaaaattaaagatacctcttcgaataatgaagttatcttaaatgca
gataaacacaaagaaataaaagaagaatttaaagaagaatatacaaactattcatcatac
agcacacaacattataatgaaaacgttattaataaagaattaataaattatagcacgatc
ttttcttgtatatctaatttttacacaatgaaacaaaaattaatagatgtaggagaaacc
tatcgatacatattaacaatgaaaaaacatataaccccatatttatctctaggtagacta
ttgtatataattcaggaggatttacgttggggctggtgcatatgtatagaaggtcaactt
attgaacataagaaagcaaatgaccatcaaaaaaataaacacaacagcaacaataataat
attaataacaacaattctggtgatcataatgatttaaaacaagctaagagcgaacaagaa
acattatttgttgaatgtcttgtgccttgtaatcataatataaaaagaaaactaaccata
aatgatgatgacgatgataatataaatcataataataataataattattcttatggtgaa
gataatataaataaaacatattatgatgataaagaataccaaccagcaagtgatagatca
aaagccagatggaaagttatatcctttaatattaaatgtgtttatcaattatctgctgtt
gtcctaagtatagataaaccatttgataaaaagaatgaagaacaaattgaaaatattaaa
accaaatataatactatggtaacttgcttaaaaggagaaaaaaatattccagttataaat
cctaatcaaatgggaataaaaaatgaaacttttatttctattgtaaaaaatttaaaattt
catgaaaatattataaataaaaataaactattaaataataaaaacttgaacaaatattac
caaatgtatagtaaatatgtagctctacaatgtgaaaaaaatgtattagaaagtaatata
gaaaaatgtagatttatagttctcaaaaaagaactgaaaaatatgctagtacttttagaa
agcttaaattatattgaagtatcatataatttagaaaatcttaaaaatgaaaaagatata
aaaactattgaaaattcaataacagaacatataaaaaaggaacgaattatgaatattaaa
aatgaaacatccaaaaataatcatgaagaaaaaaattatgttgttactatgaaaggacaa
atagcaagtgcaattttaagtgtagatgaattagtaatatcagaattatttttttcaaat
ttttttagtaaatataattatgattatatatgtgcattcttatcatgttttgtatatgat
gaatccacaagtaaagaaattacaattaatgatccaatattagtagaaggatatcagcaa
attattaaaacagcaaatcatgtagcaacgaaaatgaatgagtgtggaatgaacataaat
ctaaaggattatatcgacaaatttaaatcagcaattatgcccatagctttattatgggca
cgtggacactcatttgttgaaatattgtcagattcgcaaatatatgaagggtctataata
agaaccctaagacgattagatgaacttataaggcaaatgatttgtgcatttagaggtatt
aataatgatagcatgtgtgaaacattaacattagctactaataaattaagacgtggtata
cctttttccccatctttatatttataa
DBGET
integrated database retrieval system
