Plasmodium reichenowi: PRSY57_1104200
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Entry
PRSY57_1104200 CDS
T08079
Name
(RefSeq) conserved protein, unknown function
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prei
Plasmodium reichenowi
Brite
KEGG Orthology (KO) [BR:
prei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prei03016
]
PRSY57_1104200
Enzymes [BR:
prei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PRSY57_1104200
Transfer RNA biogenesis [BR:
prei03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PRSY57_1104200
Prokaryotic type
tRNA splicing ligases
PRSY57_1104200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
24531639
NCBI-ProteinID:
XP_012763467
UniProt:
A0A060RTS7
LinkDB
All DBs
Position
11:144021..145541
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AA seq
506 aa
AA seq
DB search
MKGIPKRHISNYIEKTNETNLYKIRKGLVNEMNVEGHIYVNEKLKTLLDEEIATYELNKN
STFLPAVMQIANVSTLPGIVKASIALPDVHAGYGFSIGNVAAFDMDDEKAIVSPGGVGFD
INCGVRLIRTNLFYEDIKPKQEELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWC
VKEGYAWIEDKLNCEDNGRSLYADSNFVSIRAKKRGITQMGTLGAGNHYAEIQIVDQIYD
KKSAKLMGIEKKNQVCIMIHSGSRGLGHQIATDALIDMEKSMNKYKINVIDKQLACTPIH
SKEGQNYLKAMGSACNFAWINRSSMTFLARQAFSKIFNQSPDDLDMHVIYDVSHNIAKIE
EHYIDGKIKKLLVHRKGSTRAFPPFHPLVPLDYQYCGQPILIGGTMGTYSYVLTGNEKAM
QATFGSTCHGAGRALSRNKSRNTLSYVDVLNKLKEQNISIRVASPKLIMEEAPESYKNVS
DVVQTCHDAGISNKCFRLKPVAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaataccgaaacgtcatatttctaactatatcgagaaaactaacgaaacgaat
ttgtataaaataagaaaaggtttagttaatgaaatgaatgtagaaggacatatttatgta
aatgagaaattgaaaacattactagatgaagaaatagcaacatatgagttaaataagaat
tcaacatttcttcctgctgtaatgcagattgctaatgtatctacattaccaggtatagta
aaagcatcaatagctttgccagatgtacatgcaggttatggattttccataggaaatgtt
gcagcatttgatatggatgatgaaaaagctatcgtatctccaggtggtgtaggattcgat
ataaattgtggtgttcgtttaatacgtacgaatttattttatgaagacataaaaccaaaa
caagaagaattaacacaattattatttaatcatatccctgtaggtgtaggctcacaagga
tttattttatgtaatcaagaaaatttagatgatgctttatgcttaggtatggattggtgt
gtcaaagaaggatacgcatggattgaagataaactaaattgtgaagataatggtagaagt
ctatatgctgatagtaattttgtttctataagagctaagaaaagaggaataacacaaatg
gggacattaggtgcaggaaatcattatgctgaaatacaaattgttgatcaaatatatgac
aaaaaaagtgctaaattaatgggtattgaaaaaaaaaatcaagtttgtattatgattcat
tcaggtagtagaggcctaggacatcaaatagctacagatgcattaatagatatggaaaaa
agtatgaacaaatataaaattaatgttatcgataaacaactagcctgcacacccatacac
tcaaaagaaggacaaaattatttaaaagccatgggttctgcatgtaattttgcatggatt
aatagatcatccatgacttttttagctagacaagcattttcaaaaatttttaatcaatca
ccagatgatttagatatgcatgttatatatgatgtttcacataatatagccaaaatcgaa
gaacattatatagatggaaaaattaaaaaattattagtacacagaaaaggatccacaaga
gcattcccacctttccatcctctagtacctctagattatcaatactgtgggcaaccaata
ttaataggaggtaccatggggacctattcttatgtattaacaggaaatgaaaaagctatg
caagccacatttggttcgacatgccatggagctggtagagcattaagcagaaataaaagt
agaaatacattaagctatgtagatgtacttaataaattgaaagaacaaaatatttctata
cgtgttgcttcgccaaaattaattatggaagaagcaccagaatcgtataaaaacgtttct
gatgttgtacaaacgtgtcacgatgcaggtatatctaataaatgtttccgtttgaaaccc
gtagccgtcataaagggataa
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