Plasmodium relictum: PRELSG_0412800
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Entry
PRELSG_0412800 CDS
T09405
Symbol
UAP56
Name
(RefSeq) ATP-dependent RNA helicase UAP56, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
prel
Plasmodium relictum
Pathway
prel03013
Nucleocytoplasmic transport
prel03015
mRNA surveillance pathway
prel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PRELSG_0412800 (UAP56)
09122 Translation
03013 Nucleocytoplasmic transport
PRELSG_0412800 (UAP56)
03015 mRNA surveillance pathway
PRELSG_0412800 (UAP56)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prel03019
]
PRELSG_0412800 (UAP56)
03041 Spliceosome [BR:
prel03041
]
PRELSG_0412800 (UAP56)
Enzymes [BR:
prel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PRELSG_0412800 (UAP56)
Messenger RNA biogenesis [BR:
prel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PRELSG_0412800 (UAP56)
Spliceosome [BR:
prel03041
]
Complex C
Other components
EJC/TREX
PRELSG_0412800 (UAP56)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PRELSG_0412800 (UAP56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
39734878
NCBI-ProteinID:
XP_028531787
UniProt:
A0A1J1H1I0
LinkDB
All DBs
Position
4:471349..472998
Genome browser
AA seq
474 aa
AA seq
DB search
MASIDHSVQDELVDYEDDDNILDNKDTKGSLENNILNDNNKNVNENGAMRGSYATVHTGG
FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ
LDTNENKEIKDEKEINNIRTNDSNNISDELKSNNKVQNKYVRCLGLAHTRELAYQIKNEF
DRFSKYLKNVRCEVVYGGISMSKHIKLFKEENIPHIIIGTPGRILALIREKYLITDKIQH
FVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFID
DEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNF
PSIAIHGGLEQQERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYL
HRVGRAGRFGTKGLAITFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcttctattgatcatagtgttcaagatgaattagtagattatgaagatgacgataat
atattagataataaggatacaaagggaagtttagaaaataatattttaaatgataataat
aaaaatgttaatgaaaatggagcaatgagaggtagttatgcaacagttcatacaggagga
tttaaagatttttttttaaaaccagagttgttaagagcaattagtgaaagtggatttgag
catccttccgaagtacagcaagagactattccagctgcaattacaggtactgatatactg
tgtcaagcaaagagtggaatgggaaaaacagctgtttttgttttatccattttacaacaa
ttagatactaatgaaaataaagaaataaaagatgaaaaagaaataaataatattagaaca
aatgatagcaataatattagtgatgaattgaaaagtaataataaagtacaaaacaaatat
gttagatgtttaggtttagcacatacacgtgaattagcttatcaaataaaaaatgaattt
gatagatttagtaaatacttaaaaaatgttcgatgtgaggtagtatatggtggtatatca
atgagtaaacatatcaaattatttaaagaagaaaatattcctcatataattattggaact
ccaggacgtattctagcactgataagagaaaaatatttgataacagataaaattcaacat
tttgtattagatgaatgtgataaatgtttagaaaaattagatatgagaagtgacgttcag
aaaatatttatatctactcccttaaaaaagcaagtaatgtttttctctgcaacaatggca
aaagaaatgagagacgtttgcaaaaaatttttacaaaatccagtggagatatttattgat
gatgaagctaaattaaaattacatggtttattacaacattatgtaaaattacaagaaaaa
gataaaacaagaaaattaatagaaatattagatgctttagaatttaaccaagttataatt
tttgttaaatctgtcacaagagctattactttagataaattattaacagaatgtaacttc
ccatcaatagcaatacatggtggattggaacaacaggaaagaattgaaagatatgataaa
tttaaaaaatttgaaaacagaatattagtatcaacggatttatttggaagaggtatagat
atagaaagagtaaatattgtaataaattatgatatgcctgaaaattctgattcatatttg
catagagttggtagagctggaagatttggaacaaaaggattagctataacttttgtttca
tctcaagaagataccctagcattaaacgaagttcaaacaagatttgaagttgccatatca
gaaatgcccaataaaatcgattgtaatgaatatattaaccaatag
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