Plasmodium relictum: PRELSG_0803300
Help
Entry
PRELSG_0803300 CDS
T09405
Name
(RefSeq) regulator of nonsense transcripts, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
prel
Plasmodium relictum
Pathway
prel03013
Nucleocytoplasmic transport
prel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PRELSG_0803300
03015 mRNA surveillance pathway
PRELSG_0803300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prel03019
]
PRELSG_0803300
Enzymes [BR:
prel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PRELSG_0803300
5.6.2.5 RNA 5'-3' helicase
PRELSG_0803300
Messenger RNA biogenesis [BR:
prel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PRELSG_0803300
mRNA cycle factors
Common to processing body (P body) and stress granule
PRELSG_0803300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
DEAD
SRP54
AAA_22
Helicase_RecD
PhoH
AAA_16
AAA
Motif
Other DBs
NCBI-GeneID:
39735709
NCBI-ProteinID:
XP_028532612
LinkDB
All DBs
Position
8:complement(126176..130321)
Genome browser
AA seq
1381 aa
AA seq
DB search
MDNTFDYSQIDIDDFDEFNDFCNIRDKKKKKDSYFSADYDENNKKGTDSTKNKEGVRKSK
KEKSHKKNKKNSKSTNYSYSSNEKRLDNVEENEEYDSLYKKKKKNYKNNQYLNSNNLQNN
LDSVIEKSSYDDNKSNKYMENLKEDYDIGKKKSYEENNKKYINDSNNNNNNSNSKSKNNK
NKEKLKYYRCRYCEIDSIDSVVQCNNCNRWFCNGSYGTCGSHIVTHLVRSKHKEIKLHKN
SLLGETILECYNCGCRNVFLLGFLPTSEEGVVVIICRDPCLANCISLNEKNITKNENKSI
IKEEGEEKEEKDKEDEDENSEEDSTNKRKNEISVSDENEYSDLNEQEKNKIGDNYINNER
NEINNNKKKFNESEERNKINNKEKINSCDNEDGKKKKKKEKKSNNNNIYNNLEELGNIKD
WNLKKWQPLIEDRSFLDWLVSIPSTEEAEKKGKLATSYNVNKLEELWKNKKDVYIDELDL
EILNDEPIKVELKYEDAHHYQSIFAPLVQLEADYDKSIKEGQKQANVTVRWDVGLNKKRY
AHFIYVKEESELRLVAGDELKLSYTYPNGKVWSCEGHISRLHNTEEIALELRILGTADGP
WVDNITTGFTVEFVWKSTAYDRMQLALNEFALNSYSLSGFLYHKLLGHDISEDSLEYNKN
NFYKQMQKKVMSIRNYSAPNLAPLNHSQIDAIKKSLLSPLSLIQGPPGTGKTLTCATLVY
HLSKMNMGKVLVTAPSNVAVDQLSVRIHRSGLKVVRLCAKSRESVPSVADYLYLHNQMKL
LKTDIGEELNKLLELKEEVGELSQKDERRLKKLISYAEHEILIAADVICATCVGAMDKRL
KKFRFRQVLVDEATQSTEPECLVPLVTGAKQIVLVGDHCQLGPIIVCKKAANAGLGKSLF
ERLVMLGITPFRLEVQYRMHPALSEFPSYVFYDGSLQNGITLKEREYPLKDFPWPNPKCP
MFFYNSTGLEEMSASGTSYLNRSEASNMEKLVRTLLKCGLKPNQIGVITPYEGQRAYITS
LFQKNISFQHSAEIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNVALTRAK
YGLIICGNAKVLSRHHFISKEKINSNETITNVNSVWINLLSQFKKKDLIVEGCLSNLKPV
NINIPTPTKLPSRYTNFNYFQNYEKEKNKISNTSHNRKYNSNNNNNSFINVNLSNNSYCS
DSIINKDFFSYINKHGNKNIFNSYINNLSQLSQFNDYSIDTKNFLTENNKNYDMSIPPNN
NFSTHNLLYYNNQSEDKNVSNNSLDLNNKESYDNSVSKNYDMFFPYLFYYKNNQNNGSIP
YIYLNEKNESTQSTTNKKFKNNILSNSPIQNMMSQGSSMIFDDFKLNCDNTQQLSQNTQF
T
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggataacacatttgattatagccaaatagatatagatgattttgatgaattcaacgat
ttctgtaatataagagacaagaaaaaaaaaaaagatagttatttttctgctgattatgat
gaaaataataaaaaaggtactgatagtacaaaaaataaagaaggagtaagaaaaagtaag
aaagaaaaaagtcataaaaagaataaaaaaaatagtaaatcaactaattattcttattct
tctaatgagaaaagattagataatgtagaagaaaatgaagaatatgattctctttataaa
aaaaaaaaaaaaaattataaaaataatcaatatttaaattcgaataatttgcaaaataat
ttagacagcgtaattgaaaaaagtagttatgatgataataagtccaataaatatatggag
aatttaaaagaagattatgacataggaaaaaaaaagagttatgaagaaaataacaaaaaa
tatataaatgacagtaataataataataataattctaactctaaatcaaagaataataaa
aataaagaaaaattaaaatattacagatgtcgctattgtgaaattgattcaattgacagc
gttgttcaatgcaataattgtaatcggtggttttgtaatggctcatatgggacatgtggt
agtcatattgttactcatttagttcgatcgaaacataaagaaattaaattacataaaaat
agtttactaggtgaaacaattttagaatgttacaattgtggttgcagaaatgtattcttg
ttaggtttcttgccaacttcagaagaaggagtagttgtcattatctgtagagatccatgt
ttagctaattgtatttcattaaatgaaaaaaatataacaaaaaatgaaaataaaagtatc
ataaaagaagagggggaggaaaaggaagaaaaggataaagaagatgaagatgaaaatagt
gaagaggatagtacaaataaaagaaagaatgaaatcagtgtgagtgatgaaaatgaatat
agtgatttgaatgaacaagaaaaaaataaaattggtgataattatattaataatgaaaga
aatgaaataaataataataagaagaaatttaatgaaagtgaagaaaggaataaaataaat
aataaagaaaaaattaatagctgtgataatgaagatggaaaaaagaaaaagaaaaaagaa
aaaaagagtaataataacaatatatacaataatttagaggaattaggaaatataaaagat
tggaatttaaaaaagtggcagcctttgatagaagatagaagttttcttgattggttagtt
agcataccatctactgaagaagcagaaaaaaaaggtaaattagctacttcttataatgta
aataaattagaagaattgtggaaaaataaaaaggatgtttatatagatgaattagattta
gaaatattaaatgatgagccaataaaagttgaattaaaatatgaggatgctcaccattat
caatcaatattcgcaccacttgttcaattagaagcagattatgataaatctataaaagaa
ggccaaaagcaagcaaatgttactgttcgatgggatgttggtttaaataaaaagagatat
gctcatttcatttatgtaaaagaggagagtgaattaagattggtagcaggagatgaattg
aaattatcatatacatatccaaatggaaaggtgtggagttgtgaaggacatatatcaaga
ttacataatacagaagaaatagcactggaattaagaattttaggcacggctgatgggcct
tgggtagataatataactacaggatttactgttgaatttgtttggaaaagtactgcttat
gatcgtatgcaattagcattgaatgaatttgcattaaattcttattcattaagtggcttt
ttatatcataaattattaggacatgatatttcagaagattctttagaatataataaaaat
aatttttataaacagatgcaaaaaaaagtaatgagtataagaaattattcagcaccaaat
ttagctccccttaaccattctcaaatagatgcaattaaaaaaagtttactatctccttta
tcattaattcaaggtccaccaggaacaggaaaaacgttaacttgtgcaacgttagtgtat
catttatcgaaaatgaatatgggtaaagttttggtaacagctccaagtaatgtagctgta
gatcaattatctgtccgaatacacagaagtggtttaaaagtagtaagattatgtgcgaaa
agtagagaatctgtaccaagtgtagctgactatttatatttacataatcaaatgaaatta
ctgaaaacagatataggtgaagaattaaataaactactagaattaaaagaggaagtaggg
gaattatctcaaaaagatgaaaggagattaaaaaaattaatttcttatgcagaacatgaa
atattaatagcagctgatgttatttgtgctacatgcgttggtgctatggataaaaggtta
aaaaaatttcgttttcgtcaagtattagttgatgaagctacacaatcaacagaacctgaa
tgcttggttccattagtgacaggtgcaaagcaaattgttttagttggtgatcattgtcag
ctagggccgattattgtttgcaaaaaagcagcaaatgcaggattaggaaaaagtttattt
gaaagattggtcatgttagggattactccatttagattagaagtacagtatcgtatgcat
ccagctttaagtgaatttccttcatatgttttttatgatggaagtttgcaaaatggaatt
acattgaaagaaagggaatatcctttgaaagattttccttggcccaatcctaaatgccca
atgtttttttataattcaacaggacttgaagaaatgtctgcatctggaacaagttattta
aatagaagtgaagcatctaatatggaaaaattagttcgaacattattgaaatgtggctta
aaacctaatcaaataggtgtcattaccccttatgaagggcaaagagcatatatcacttca
ttgttccaaaaaaatatttcttttcaacattcagcagaaattgaagttgcttctgttgat
gcttttcaaggaagagaaaaagattttattcttttatcatgtgttagatctaataaaaaa
ttaggtataggtttcttaaacgatcctagaagattaaatgttgctttaactagagctaaa
tatggactaataatatgtggtaatgcaaaagtattatcgagacatcatttcatatcaaaa
gaaaaaataaattccaatgaaacaattactaatgttaattcagtatggataaatttgtta
agtcaattcaaaaaaaaagatttaattgtagaaggatgtttatctaatttaaagcctgtt
aatattaatattcctactcctacaaaattgccatctagatatactaatttcaattatttt
caaaattatgaaaaagaaaaaaataaaatatctaatacctcacacaacagaaaatataat
agtaataataataataattcatttatcaatgttaatctatctaataatagttactgtagt
gattctattataaataaagatttttttagttatattaataaacatggaaataaaaatatt
tttaattcatatattaataatttaagtcagttatctcaatttaatgattattctattgat
actaaaaatttcttaacagaaaataacaaaaattatgatatgtctattccaccaaacaat
aatttctcaactcataatttattgtattataataatcaaagtgaagataaaaatgtatct
aataattcattagatttaaataataaggaaagttatgataattctgtttcaaaaaactac
gatatgttttttccctatttattttattataaaaataatcaaaataatggttctattcca
tatatatatttgaatgagaaaaatgaatctactcagtcaactacaaataaaaaattcaaa
aataacattttgagtaattctcctattcaaaatatgatgtctcaaggtagttctatgatt
tttgatgattttaaattaaattgtgataatacacaacaactatctcaaaatacgcaattt
acctaa
DBGET
integrated database retrieval system
