Plasmodium relictum: PRELSG_0902900
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Entry
PRELSG_0902900 CDS
T09405
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB, putative
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prel
Plasmodium relictum
Brite
KEGG Orthology (KO) [BR:
prel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prel03016
]
PRELSG_0902900 (RTCB)
Enzymes [BR:
prel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PRELSG_0902900 (RTCB)
Transfer RNA biogenesis [BR:
prel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PRELSG_0902900 (RTCB)
Prokaryotic type
tRNA splicing ligases
PRELSG_0902900 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ATLF
Motif
Other DBs
NCBI-GeneID:
39736041
NCBI-ProteinID:
XP_028532938
UniProt:
A0A1J1H8L2
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Position
9:<119516..>121039
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AA seq
507 aa
AA seq
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MRSQKRGDNVISYIEKTKERNLYKINKGLVQNMNVEGHIYVNERLKLLIDDEIKTYELNK
SSTFLPAVIQIANVSTLPGIVKASIALPDVHAGYGFSIGNVAAFDMNKEKSIVSPGGVGF
DINCGVRLIRTNLFYDDIKPKQEELTQSLFNHIPVGVGSQGFILCNQDNLDDALCLGMDW
CVKEGYSWIEDKLNCEDNGRSLYADSNYVSVRAKKRGITQMGTLGAGNHYAEIQIVDEIY
DKKSAKLMGIEKKNQVCVMIHSGSRGLGHQIATDALIEMEKSMNKYKINVIDKQLACTPI
YSKEGQNYLKAMGAACNFAWINRSAMTFLARQTFSKMFNQSPDDLDMHVIYDVSHNIAKI
EEHFIDGKIQNLLVHRKGSTRAFPPFHPLVPLDYQYCGQPILIGGTMGTYSYVLTGTEKA
MQATFGSTCHGAGRALSRNKSRNTLSYVDVLNKLKEENISIRVASPKLIMEEAPESYKNV
SEVVQTCHDAGISNKCFRLKPIAVIKG
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcacaaaaaagaggtgacaacgtaattagttatattgaaaaaactaaagaaaga
aatttatataaaataaataaagggttagttcagaacatgaacgtggaaggtcacatctat
gtaaatgaaagattaaaattattaatagatgatgaaataaaaacatatgaattaaataaa
agttctacttttttacctgcagtaatacaaatagctaatgtttctacattaccaggaata
gtaaaagcatcaattgctttacctgatgttcatgccggttatggtttttctattggaaac
gtagcagcttttgatatgaataaagaaaaatcaatagtatctccaggaggggtagggttt
gatattaattgtggtgtccgcttaataagaactaacttgttttatgatgatataaagcca
aaacaagaagaattaactcaatcactatttaatcatatacctgtaggggttggatcccag
ggatttattttatgtaaccaagataatttagatgatgctttatgtttgggtatggattgg
tgtgttaaagaaggatattcctggattgaagataaattaaattgtgaagacaatggaaga
agtttatatgctgatagcaattatgtatccgttagagcaaaaaaaagaggaataacacaa
atgggaacattaggagcaggaaatcattatgcagaaattcaaatagtagacgaaatttat
gacaagaaaagtgctaagttaatgggtattgaaaaaaaaaatcaagtttgtgtcatgatt
cactctggtagtaggggattaggacatcaaatagccactgatgcgttaatagaaatggaa
aaaagtatgaacaaatataaaataaatgtaattgataagcaattagcttgcacaccaatt
tattcaaaagagggacaaaattatttaaaagctatgggagccgcatgtaattttgcatgg
ataaatagatctgctatgacttttttagcaaggcaaactttttcaaaaatgtttaatcaa
tcaccagatgatttagatatgcatgtgatatatgatgtttctcataacatagcaaaaatt
gaagaacattttattgatgggaaaatacaaaacctgttggttcatagaaaaggttctaca
agagcttttcctccatttcatccattagtacctttagattatcaatattgtggtcaacca
atattaataggggggacaatgggtacatattcttatgtattaacaggaacagaaaaagca
atgcaagcaacctttggctcaacttgtcatggtgctggtagggctttaagtagaaacaaa
agtagaaatacactaagttatgtagacgttttaaataaattaaaagaagaaaatatatca
ataagggtagcttctcctaaattaataatggaagaagcaccagaatcatataaaaatgtt
tcagaagttgttcaaacttgtcatgatgcaggaatatcaaataaatgctttcgtttaaaa
ccaatagcagttataaagggatag
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