Plasmodium relictum: PRELSG_1237700
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Entry
PRELSG_1237700 CDS
T09405
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5, putative
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
prel
Plasmodium relictum
Pathway
prel03018
RNA degradation
prel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PRELSG_1237700 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
PRELSG_1237700 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prel03019
]
PRELSG_1237700 (LSM5)
03041 Spliceosome [BR:
prel03041
]
PRELSG_1237700 (LSM5)
Messenger RNA biogenesis [BR:
prel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PRELSG_1237700 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
PRELSG_1237700 (LSM5)
Spliceosome [BR:
prel03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PRELSG_1237700 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
39737622
NCBI-ProteinID:
XP_028534493
UniProt:
A0A1J1HDI9
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Position
12:complement(<1417427..>1418011)
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AA seq
105 aa
AA seq
DB search
MTTISSSETFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYVNN
VKKVNKIKKLLLNGLNITIMVPGGTPVNYYDYEEKLEENIDEKAS
NT seq
318 nt
NT seq
+upstream
nt +downstream
nt
atgactacaataagtagttcagaaacatttttgccgctcgctttgatggataaatgtatt
ggaagtaagatatggataatgatgaaaggtgataaagaaattgttggaaaattggtcggt
tttgatgaatacgttaatatggtgttagaagatgtaactgaatatacgtatgtaaataat
gttaaaaaagtaaataaaataaaaaaattattattaaatggtttaaatataacaataatg
gttcctggaggaacaccagttaattattatgactacgaagaaaaattagaagaaaatatt
gatgaaaaagctagctaa
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