Plasmodium relictum: PRELSG_1450900
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Entry
PRELSG_1450900 CDS
T09405
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3, putative
KO
K12830
splicing factor 3B subunit 3
Organism
prel
Plasmodium relictum
Pathway
prel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PRELSG_1450900 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prel03021
]
PRELSG_1450900 (SF3B3)
03041 Spliceosome [BR:
prel03041
]
PRELSG_1450900 (SF3B3)
03036 Chromosome and associated proteins [BR:
prel03036
]
PRELSG_1450900 (SF3B3)
Transcription machinery [BR:
prel03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
PRELSG_1450900 (SF3B3)
Spliceosome [BR:
prel03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
PRELSG_1450900 (SF3B3)
Complex B
PRELSG_1450900 (SF3B3)
Complex C
U2 SnRNP specific factors
PRELSG_1450900 (SF3B3)
Chromosome and associated proteins [BR:
prel03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
PRELSG_1450900 (SF3B3)
TFTC complex
PRELSG_1450900 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
39738941
NCBI-ProteinID:
XP_028535295
UniProt:
A0A1J1HBU7
LinkDB
All DBs
Position
14:1980084..1984604
Genome browser
AA seq
1266 aa
AA seq
DB search
MPVLYHLTLQKPTAITKAVYGNFSGPRAHEIIVAKGQVLELLRADKQGKLNLIVSRDIFG
IIRCISTFRLTGSNKDYIVIGSDSGRLVILEYSNEKSDFIRVHCETYGKSGIRRIIPGEY
IAVDPKGRALMICAIERQKFVYILNRDNKENLTISSPLEAHKSHSICHDVVGLNVGFENP
MFASIEQNYELLDKQSNIDDLDYPKKGLCFWEMDLGLNHVIKKYTLPIDITAHLLIPIPG
GQQGPSGVIVCCENYLVYKKADHEDIYCSYPRRLEISEDKNISIVCWTMHRIKKFFFILI
QSEYGDLYKIEMDHEDGIVKEIVCKYFDTVPIANSICVLKSGSLFVAAEFGNHFFYQFSG
IGDDNNDLMCTSNHPLGKNAIIAFKTQKLKNLFLVDQIYSLSPILDMKILDAKNANSPQI
YTLCGRGPRSSLRILQHGLSIEELADNELPGKPKYIWTVKKDNTSEYDGYIVVSFEGSTL
ILEIGETVEEVYDSLLLTNVTTLHINILYDNSFIQVYDTGIRHINGKIVQEWVAPKNKQI
KAACSNSAQIVISLSGGELIYFEIDESHTLVEIFRKNLNVEILCLSMQQISENRLRANFL
AVGCLDNVVRLLSIEKDKYFKQLSTYLLPNNSSPQDICISEMKELGNDKERNALFLNIGL
NTGVLLRSIIDPVAGTLSNHYSKYLGAKSVKICHVNVNKNPALLVLCEKTYLCYVYQGKY
VYSPLNYDMLEYASSFYSEQCSDGYVAISGNSLRIFRFYRLGEVFSQNILHLTFTPRKIV
SLPFPSLFYDHDSSIEVERKKKIRMLAIIEADHNSYDENTQKEIQKALKDIKLDIGDKEN
KENMNNENNEIDTNKQNESTSNNNSSQNNIQGLSNDANKNDVDNNNNTINETNEEENEEE
LLYDRIGTLKAGAGKWGSCIKIINPINLQIVDKISLEMEEAALSVCACELEALHCLIVGT
TSNMSLKSRNVPAAALRVYTYDIKYKLNLLHITPIEDQPFCFCPFNGRLIASIGNKLRIY
ALGKKKLLKKCEYKDIPEAIVSIKVSGDRIFASDIRESVLIFFYDSSQNIIKLISDDIIP
RWITCSEILDHHTIIAADKFDSVFILRVPEEAKQEEYGITNKCWYGGEIMNSTNKNRKLE
HIMSFHIGEIVTSLQKVKLSPTSSECIIYSTIMGTIGAFIPYDNKEELELTQHLEIILRT
EKPPLCGREHIFFRSYYHPVQHVVDGDLCEQFSSLSYETQRKIAADLERTPDDILRKLED
IRNKIL
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttttatatcatttaactttgcaaaaaccgacagccattactaaagctgtctac
ggtaatttttctgggcctagagcacatgaaataatagtagcaaaaggacaggtattggag
ttattaagagcagataaacaaggaaaattgaatctgatagtttctagagatatatttggt
atcataagatgtatatctacttttaggttaacgggtagcaataaagattatatagtaatt
ggaagtgattcaggaagattagtgatattagaatatagcaatgaaaaaagtgattttata
agggtccactgtgaaacatatggaaagagcggtatacgacgaataatacctggggaatac
atagcagtagatcctaaaggaagagctttaatgatatgtgcaatagaaagacaaaaattc
gtatacatattaaatagagataataaagaaaatttaactattagtagtccattagaagca
cacaaatcacattctatttgtcatgatgtagtaggattaaatgtaggttttgaaaatcct
atgtttgcatctattgagcaaaattatgaactgctagataagcaatctaatatagatgat
ttagattatcctaaaaaggggttatgtttttgggaaatggatttagggttaaatcatgta
ataaaaaaatatacacttccaattgacattactgcacatttactcattccaataccaggt
ggacaacaaggacctagtggagttattgtttgctgtgaaaactatttggtttataaaaag
gccgatcatgaagatatatattgttcttatcctagaagattagaaataagtgaggataaa
aatatttctattgtttgttggactatgcatagaattaaaaaattctttttcattcttatt
caatcggaatatggagatttatataaaattgaaatggatcatgaagatggtattgtaaaa
gaaattgtttgtaaatattttgatacagttcctattgctaattctatatgtgtattaaag
tctggttctttatttgtcgctgctgagtttggaaatcattttttttatcagttttctgga
ataggagatgataataatgatcttatgtgtacttctaatcatcccttaggaaaaaatgct
attatagcttttaaaactcaaaaattaaaaaacttattcttagtggatcaaatatattct
ttatctccaattttagatatgaaaatacttgacgctaaaaatgctaactctccacaaatt
tatactttatgtggaagaggtcctagatcctctcttcgaattttacaacatgggctaagt
attgaagagttagctgataatgaacttcctggaaaacctaaatatatatggaccgttaaa
aaagacaatacaagtgaatatgatggttatattgtagtaagttttgagggaagcacttta
atactagaaattggagaaacagtagaagaagtatatgatagtttacttttaacaaatgtt
acaactttgcatataaatattttatatgacaattcatttattcaagtatatgatacagga
attaggcatatcaacggaaaaatcgttcaagagtgggttgcaccaaaaaataagcaaatt
aaagcggcttgctctaatagtgctcaaattgttatatccctaagtggtggtgagttaata
tactttgaaatagatgaatctcacacattagtagaaatatttcgaaagaatttaaatgta
gaaattttatgtttatctatgcaacaaatatcagaaaatagattaagagctaattttttg
gctgttggatgtttagataacgttgtaaggctattatctattgaaaaagataagtatttt
aaacaactttcaacatatttattaccaaataattcttcaccgcaagacatatgcatatct
gaaatgaaagaattaggaaatgataaagaacgcaatgctttatttctgaatattggttta
aatactggtgttttactaagaagtattattgatccagtagctggtactttaagtaatcac
tattctaaatatttaggagctaaaagtgtaaaaatatgtcatgtaaatgtaaataaaaac
ccagccctattagttctatgcgaaaaaacatatttatgttatgtttatcaaggaaaatat
gtttattctcctttaaattatgatatgctagagtatgcatcttctttttattcagaacaa
tgttctgatggctatgtagcaatatctggaaatagtttaagaatatttcgattttatcga
ttaggagaagtatttagtcaaaatatattacatttgacttttactcctcgaaaaattgtc
tctttaccatttccttcattgttttatgaccatgactcttcaatagaagtagaaagaaag
aagaaaatacgtatgcttgcaataattgaagcagatcataattcatatgatgaaaatact
caaaaagaaatacaaaaagcattaaaagatattaaattagatattggtgataaagaaaat
aaagaaaatatgaataatgagaacaatgaaattgatacaaacaagcagaatgaatcaaca
tcaaataataattcttcccaaaataatatacagggtctgtcaaatgatgctaataaaaac
gatgtagataataataataatactataaatgagacaaatgaagaagaaaatgaagaagag
ttattatatgatagaataggaactttgaaagcaggtgctggaaaatggggttcatgtata
aaaatcattaaccctattaatttacaaatagtcgataaaatttctttggaaatggaagaa
gcagcgttaagtgtttgcgcatgcgaattagaagctttacattgtttgattgtaggaact
acttcaaatatgtctttgaagtctagaaatgttcctgctgcagctttacgagtttatact
tatgatataaaatataaactaaatttattacatataacccctatagaagatcaacctttt
tgtttctgcccttttaatggaagacttattgcatctattggtaataaattaagaatatat
gctttggggaaaaaaaaattactaaaaaagtgtgaatataaggatataccagaagcaatt
gtttcaatcaaagtctctggggatcgtatatttgcttctgatataagagaatctgtttta
atatttttttatgattcgagtcaaaatataataaaattaatatctgatgacattatacca
agatggattacatgctcagagattcttgatcatcacactattattgctgctgataaattt
gattctgtatttatattacgggtacctgaagaagctaaacaagaagagtatggtataaca
aataaatgttggtacggtggagaaattatgaatagcacaaataaaaatagaaaattggaa
catatcatgagctttcatattggagaaatagttacttctttacaaaaagtgaaattatct
cctactagtagtgaatgtataatatattctactattatgggtacgattggagcttttatt
ccctatgataataaagaagagttggaattgacacaacatttagaaataattttaagaacc
gaaaaacctcctctatgtggtagagaacatatattttttcgttcatattaccatcctgtt
caacatgttgttgatggagatttatgcgaacaattttcaagtttatcctatgaaactcaa
agaaaaattgctgcagatttagaaagaacacctgatgatattttaagaaaattagaagat
attagaaataaaattttgtaa
DBGET
integrated database retrieval system
