Poecilia reticulata (guppy): 103456816
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Entry
103456816 CDS
T05149
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103456816 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pret03032
]
103456816 (topbp1)
03400 DNA repair and recombination proteins [BR:
pret03400
]
103456816 (topbp1)
DNA replication proteins [BR:
pret03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
103456816 (topbp1)
DNA repair and recombination proteins [BR:
pret03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
103456816 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
103456816
NCBI-ProteinID:
XP_008394807
LinkDB
All DBs
Position
LG20:21444976..21456709
Genome browser
AA seq
1513 aa
AA seq
DB search
MTKAGKEDFIVKFVEGEGSKPDYAVKAYEAILELQSEKYLKTIQEEDVLQMDQKDKSLFV
FINFTTPAFLHCKKLGCRIVSPLVVLHCLQQQRCVPKAEKPVYNMAMADVTISCTSLDKA
TRGEVMDLVQLMGGRVYLDLNVSVSHLIAGEVGSKKYLVAANLGKPILLPTWVKACWEKS
QDSLFRYTDLPVEDFLCPILLGCTVCVTGLSSTERKEVQRLCEQHGAKYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIDKGFCQDESRYTVQRNSSTATRPNTSTPT
GTSKREDGPSLLGLSSISVNTSAAINDTALTNVTMSRVETPDPIDRLDLTVCPADDVLDG
CKLYLSGFPEKKLEKLRRLVSAAGGLRFNQPREDLTHVVVREVDQDLQKFLSTATHRPHV
VTAQWLLDCFSKGTLVPEDGYLHPDCLPPGSDAVSVSAHPPASRRSSSGPPIANPNTPKE
PITDEDLLSQYMDDDPTVVDLAPAAPENTSRKSFNRAAEPQPESWTPLHAGGPEQEPLPQ
DGLFSGKSFLLVGFGVEAEAQLSALLREQGGRLLTGRSRVVADFAVVPQLGCTVEATVDE
VVTDTWLAMCVENERVLPLPSNPLFTPVPVREGYFPLKDCVLSVSQFTGAEREALVELAK
HLGANVQDYFVRLANQKKGMLASTHLVLQTPDGTKYQAAKKWGLPAVTMHWILESARTGK
RAAEEKYLVDLPSSPEKEDESFVGGSQKAAPLQPARCSPEIPLLGPQGGKAITPLDCGRF
QSKVFRSVLDEMKPRENPSTPTPNQDGDRGKSLQKEPSLQLDTPSRFLVRDQLFRPSFNF
KDALKDLETPGGRSKPRERVETPLTNVINRNLKVALANSSVNNATEMQEVSASPPLVKTT
EKEIPQKDSGPLTGVVICVGKKLSKMQSELNAIAASLGADFRWACDNTVTHYVYQGRVGD
NSREYKAVKEKGLHVVSQYWLHACAEEQRRVSESLYPFTYNPKMSLSLSQVPSSSQRSPP
LTRTQRKDATESKHNKSAVVAAEKSAVVHPVSNGCVDQDEVNDTTEKRDTLEMRENLQRQ
LQEIMSATKMTTGRRASVRLARMGSGCTDSGPNTPEGSRAGRSGSRRTLEALRVTREAVT
DINTEPSQSEQIVWDDPTAREERAKLADNFQWPGSPSQHSEPLAAAPPPTAEHGPHLKDS
MTDSELVEMAACDVINQQMGQKVVAPPSEDPEDDILTPKAPSIAFPLAKPLVAPEPQEEK
EEEKQPPRFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGSPLRNEKYLAA
MAAGKWILHRSYLEACRSVGHFIQEDDYEWGSCSILEALPSITSQQKRLALAAMRWRKAL
QGSSEHDGAFSGWTVMLNIDQSRESGFRRLLQSGGAKVLPSPSPSLYREATHLFADFSRL
KPGDFRVDVAEATAQGVTCLKPEYIADYLMQEPTPPIELYCLTAAPPEEDPFTPSRKRKA
AADPTKLKKSRLN
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagcagggaaggaagactttattgtgaagtttgtggagggtgaaggatccaaa
ccagattatgcagtcaaagcatatgaggccattctggaactgcagtctgaaaagtattta
aaaaccatccaggaggaagatgttttacagatggaccagaaggacaagtctctgtttgtt
ttcatcaacttcaccactccagctttcctgcactgcaagaagcttgggtgcagaatagtg
agtccactggtggtgctgcactgcctgcagcagcagcgctgtgtccctaaagcagaaaaa
cccgtgtataacatggcgatggctgacgtcaccatttcctgcaccagcctggataaagca
acccgaggagaggtgatggatctggtgcagctcatgggcggacgggtctatcttgatctt
aacgtgtccgtctcacacctgatcgctggggaggtaggaagcaaaaaatacctggtggct
gccaacttgggaaaacccatactgctgcccacatgggtcaaggcatgctgggaaaaatca
caagacagtctcttcaggtacacagacctgccagttgaggactttctgtgccccatcctg
cttggctgtaccgtttgtgtgactggtctctccagcacagagcgcaaagaggtgcagcgg
ctctgcgagcagcacggggccaaatacaccggccagctcaaaatgaacgagtgcacacat
ctcattgttagtgaaccgacaggtcagaagtacgaatgcgccaggaagtggaacgtgtat
tgtgtgtctttgcactggctgttcgacagcatagataaaggtttctgtcaggatgagagc
cggtacacggtgcagcgcaactcttcaacagccacacgacccaacacctcaactcctaca
ggcaccagcaagagagaagatggtccatctttgttgggcctgagcagcatttctgtcaac
accagtgcggcgataaacgacaccgccctcactaacgtcaccatgagccgcgtggagacg
ccagaccccatcgaccggttagacctcactgtgtgcccagcagatgacgtgttggacggt
tgtaagttatatttaagcggtttcccggagaagaagctggagaagctgcggcggctcgtc
agcgctgctggaggcctgcgcttcaaccagcccagagaggatctcactcatgtggttgtg
agggaagtggaccaggacctccagaaatttctgtccacagcaactcacaggccccatgtg
gtaacagcacagtggctgctggattgtttctccaaaggcacgttggtcccagaggatgga
tacctccatccggactgtctccctccaggttcagacgccgtctctgtttccgctcatcct
ccggcgagtcgtcgctcgtcttccggcccacctattgccaacccgaacactcccaaggaa
ccaataacagacgaggatcttctctcacagtacatggacgacgaccccacagtggttgat
ctggcaccagcagcaccagagaataccagcaggaagtccttcaacagagctgcagagcct
cagccggagtcctggacgcccctccatgctgggggaccagagcaagagccactgccgcag
gacggtttgttttctgggaaatccttcctgctcgtgggtttcggtgtggaggctgaggct
cagctctcggcgctgctgagagagcaaggaggcaggctgctgacgggccgcagccgagtg
gtggcggacttcgctgtggtcccccagctgggctgcacagtggaggccaccgtggacgag
gtggtcactgacacgtggctggccatgtgtgtggagaacgagcgcgttctgccgctgccc
tctaaccctctgtttacccccgttcctgtgagggagggctactttcctctcaaagactgc
gtcctgtctgtcagccagtttacgggagcagagagggaggctctggtggagctggccaag
catctcggagccaatgtccaggattactttgtgcgcctggccaaccagaagaaaggcatg
ctggccagcactcacctggtgctacagacccctgatggaacaaagtaccaggcagctaag
aagtgggggcttcctgccgtcaccatgcactggatacttgagtcagcgcggactgggaag
agggcggcagaggagaaatatctggtggatctgccctcctctccagagaaagaagatgag
agcttcgtcggcggatcccagaaagcagctccgctccaacccgctcgctgctccccagag
atcccgttgctgggtccgcagggcggaaaagcgatcacgccgctcgattgcggtcgcttt
cagagcaaagtgtttcgatctgtgttggacgagatgaagcccagagaaaacccgagcaca
ccgacaccaaaccaagatggcgacagagggaagtcactccagaaggagccgtccctgcag
ctggacactccgtctcggttcctggtcagggaccagctcttcaggccatcctttaacttc
aaggatgcactcaaagatttggagactcctggcggaagatctaaacccagagaaagggtg
gaaactccacttaccaacgttatcaacaggaacctgaaggttgctctggcaaacagctca
gtgaataacgccacagaaatgcaggaagtctctgccagcccgccgctggtgaaaacaacc
gagaaggagatccctcagaaagactcgggacccctgactggtgttgtgatctgtgtgggg
aagaaactgagcaagatgcaaagtgaactgaatgctattgctgcttcgcttggagctgac
ttcaggtgggcctgtgacaacacagtgacgcactacgtctaccagggtcgtgttggagac
aactcccgtgaatacaaggcggtgaaggagaagggcctgcatgtggtgtcccagtactgg
ctgcatgcttgtgctgaggagcagcgacgcgtctccgagtctctgtatcccttcacctat
aatccaaagatgagtctgagcctcagccaggttcccagcagctcccagagatctccgcct
ttaacacggacacaacgcaaagacgccaccgaatcaaaacacaacaagtcggcagttgtt
gctgcagagaaaagcgcagtcgtgcatcctgtgagtaacggatgtgttgatcaagacgag
gtgaacgataccacagagaaaagagatactctggaaatgagagagaatctgcaaagacaa
cttcaggagatcatgtcggccaccaaaatgacgacaggcaggcgggcttctgtcagactg
gccaggatgggatcaggctgcaccgactcgggtccaaacacgcctgaaggcagccgggct
ggacgcagtgggagcagacgaaccctggaagctctgagggtaaccagagaagcggtgacg
gacattaacaccgagccgtctcagagtgagcagatagtttgggacgatccgacagccagg
gaggagagagcgaagctggctgataacttccagtggcctgggagtccatcccaacactca
gagcccctggcggcagcaccgcctcccacagcagagcacggaccgcacctcaaggactcg
atgacggactctgagctggtagagatggctgcttgtgacgttataaaccagcaaatgggt
cagaaggtcgtggcgcctccatcagaggatccagaagacgacatcctcactcctaaagct
cccagcatcgccttccctctcgccaaaccgctagtagcaccagagccacaggaagagaaa
gaggaagaaaagcagccgcccagatttcagctgtcgtcgctcagccctcaggagcgaatc
gattacagtcatctcatagaggaactcgggggcgtcgtcctggacaagcagtcttttgac
cccagctgctcccacatcatcgtagggagtccactgcgaaacgagaagtatctggccgcc
atggcagccggcaagtggatcctgcatcgctcttacctggaggcgtgtcgctccgtggga
cacttcattcaggaggatgattatgaatggggcagctgctccatcttggaggctctgccc
tccatcacctctcagcagaagagactggccttggctgcaatgcgttggagaaaagctttg
cagggaagctctgaacacgacggagctttcagtggctggactgtgatgctgaacatcgac
cagagcagagagtcgggcttcaggcggttattgcagtctggtggagcgaaggtgctgccc
agcccctccccgtctctctacagagaggccactcatctgtttgcagacttcagtcgtctg
aaacccggagacttcagggtggacgtagctgaggccacggcacagggagtgacatgcttg
aaaccggagtacattgcagattacctcatgcaggagccgacgccgcccatcgagttgtac
tgtctgactgcagcgccgcctgaggaagatccgttcacaccgtcccgtaaacgtaaagca
gcagccgaccccaccaagctgaaaaagagccgactgaactga
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