Poecilia reticulata (guppy): 103457049
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Entry
103457049 CDS
T05149
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03008
Ribosome biogenesis in eukaryotes
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103457049 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
103457049 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pret03021
]
103457049 (xrn2)
03019 Messenger RNA biogenesis [BR:
pret03019
]
103457049 (xrn2)
03009 Ribosome biogenesis [BR:
pret03009
]
103457049 (xrn2)
03016 Transfer RNA biogenesis [BR:
pret03016
]
103457049 (xrn2)
Transcription machinery [BR:
pret03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103457049 (xrn2)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
103457049 (xrn2)
Ribosome biogenesis [BR:
pret03009
]
Eukaryotic type
Pre-60S particles
RNases
103457049 (xrn2)
Transfer RNA biogenesis [BR:
pret03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
103457049 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
103457049
NCBI-ProteinID:
XP_008395176
LinkDB
All DBs
Position
LG21:complement(455558..474631)
Genome browser
AA seq
984 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELTEEKSRMREEIIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAQCLRYYVAE
RLSNDPGWKNVAVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCSLCGQTGHEMKDCQGVARQKQGEHDEFAGSMPAAEQE
FIFIRLCVLREYLSRELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTQNGFVNLERVEMIMQAVGVAEDNIFKKRKEDDENFKRRNKE
KRKRMKAEQQGPAFMTSGQFAPQALGRRDRPEPVHNARYQAYDMRMQSVEQHNKDAAQSL
KSMMRNGGRSSAGVSDGADRGVKRKPEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDVS
DDGFRKKVVRSYVEGLCWVLRYYYQGCASWKWFFPFHYAPFASDFRDIQEMFSEFEKDTK
PFKPLEQLMGVFPAASGNFLPPTWRNLMMSADSSIIDFYPDDFAIDLNGKKYAWQGVALL
PFVDERRLRGALADVYPDLTPDEVRRNSLGSDVLFLGRSHLLFDFIHELYRSETREEAPV
PAELCHGIQGTLNLDEDPILPDETVKSPVPLLRDISVNSAINVKFRDPQFAEGFVFKAVL
LPGAKLPSKVLKPGDYERGARGPWRPQLGFNPNRQQAHLDQAGFRALGHSLPRAQQFRGQ
YSNAAPPSSYHQGSYSRHGSGQQHFQHSRQNAPQRPPPSFSSVPPPFPRQQQQPFRGGGQ
GWDRALQAQQSAYQQNLSRGGVGPGGYQQRYDQRREDWGDRRDNRGQQQVNIWKPLGSDG
SSLTLVLTQFCSSHPDGPVRSEPL
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcttttttccgctggctgagccggaagtacccgtcgataatcgtccac
tgtgtggaggagaaggggaaggagtgtaacggcgttcgcatcccggtggacacgaccaag
ccgaaccccaacgaggtggagtttgataacctgtacctggacatgaacgggatcatccac
ccgtgcacccacccggaggacaagcccgctccgaagaatgaggacgagatgatggtggcc
atattcgagtacatcgaccgcctgttcaacatcgtgcggcccaggcgggttctctacatg
gccatcgacggagtggctccccgggccaaaatgaaccagcagcgctcccggcggttccgg
gcctccaaggagggggcagagctgacggaggagaagagccgcatgagggaggagatcatc
cagagaggaggatatcttcccccagaggagatcaaggagcgattcgacagcaactgcatc
actcctggcacagagttcatggataacctggctcagtgtctgcgttactacgtggcggag
cggctcagcaacgacccgggatggaagaacgtggcggttttcctgtctgacgccagcgtt
ccaggggagggagaacacaagatcatggatttcatcaggagacagagagctcagcccaac
cacgaccccaacacacaccactgcctgtgcggcgccgacgctgacctcatcatgctgggc
ctggccacccatgagccaaacttcaccatcatcagggaggagttcaagcccaacaagccg
cggccgtgttcgctgtgcggccagacgggccacgagatgaaggactgccagggcgtggcg
cgccagaagcagggggagcatgatgagttcgccggctccatgcctgcagccgagcaggag
ttcatcttcatcaggctctgcgtcctgagggagtacctgtccagagagctgaccatggcc
agcctgcccttccccttcgactttgagcggagcgtggacgactgggtcttcatgtgcttc
tttgtggggaacgacttcctgcctcacctgccgtccctggagatcagagagggcgccatc
gaccggctggtcaacatctacaaggacgtggtgcacaagaccggaggctacctgacacag
aacgggttcgtgaacctggagcgggtggagatgatcatgcaggcggtgggcgtggccgag
gataacatcttcaagaagcgcaaagaggacgatgagaacttcaagaggagaaacaaggag
aaacggaagaggatgaaggccgagcagcagggtccggcctttatgacctcgggtcagttc
gccccccaggccctgggcaggagggaccgtcctgagccggtccacaacgcccgctaccag
gcctacgacatgaggatgcagtcggtcgagcagcacaacaaggatgcagctcagtccctg
aagtccatgatgaggaacggaggcaggtcgtctgcaggcgtgagcgacggcgcagaccga
ggagtcaaaaggaaacctgaggacagcgacagcgagccggagcccgaagacaacgtcagg
ctgtgggaggacggctggaagcagaggtactataagaccaagttcgacgtggacgtgtct
gacgacggcttcaggaagaaggtggtgcgctcctacgtggaggggctgtgctgggtgctg
cgctactactaccagggctgcgcctcctggaagtggttcttcccgttccactacgctccg
ttcgcctccgacttcagagacatccaggaaatgttctcagagttcgagaaggacaccaaa
ccgttcaagcctctggagcagctgatgggagtgtttcctgccgccagtgggaacttcctg
ccgcccacatggaggaacctgatgatgagcgcggattcctccatcatcgacttttaccct
gacgacttcgccatcgacctgaacgggaagaagtacgcctggcagggcgtggccctgctg
ccgtttgtggatgagcgccgactgaggggggctctggccgacgtttaccccgacctgacg
cccgacgaagtgcggaggaacagtctgggcagcgacgtcttgttcctgggcagatcccac
ctgctgttcgacttcatccatgagctgtaccgctcagagactcgggaggaggcgccggtt
ccggcggagctctgccacggcatccagggaacgctgaacctggacgaggaccccatcctt
ccagacgagacggtgaagtcgcctgttcctctgctcagagacatttcagtcaacagcgcc
atcaatgtgaagttccgggatccccagtttgctgaaggcttcgtgttcaaagcggttctg
ctgccgggagccaagttgcccagcaaggtgctgaaaccaggggactatgagcggggggcc
cggggcccctggaggccccagctgggcttcaaccccaacaggcagcaggcccacctggac
caggccggcttccgggcgctgggccacagcctgcccagagcccagcagttcagaggtcag
tacagcaacgctgcaccgcccagcagctaccaccaggggagctacagccgccacggcagc
ggccagcagcacttccagcattccaggcagaatgcgccgcagcgtccgccgccgtccttc
agcagcgttccgccgccgttccccaggcagcagcagcagccgttccgcggcgggggccaa
ggctgggaccgggccctccaggctcagcagtctgcgtaccagcagaacctgagccgcggc
ggggttggaccgggcggctaccagcagcgctacgaccagcgccgggaagactggggcgat
cgccgtgacaaccggggccagcagcaggtaaacatctggaaacctctgggatcagatgga
tccagtttgactctggttctgacccagttctgctcatcacatcccgacgggccagtcaga
tcagaaccactttga
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