Poecilia reticulata (guppy): 103457156
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Entry
103457156 CDS
T05149
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103457156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pret03021
]
103457156
03019 Messenger RNA biogenesis [BR:
pret03019
]
103457156
Transcription machinery [BR:
pret03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103457156
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103457156
U7-dependent histone pre-mRNA processing factors
103457156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
103457156
NCBI-ProteinID:
XP_008395338
LinkDB
All DBs
Position
LG21:complement(1910607..1917515)
Genome browser
AA seq
685 aa
AA seq
DB search
MAAKRKADATVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEDSMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDRRNGVI
IAGYCVEGTLAKHIMTEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLTFRGEKLAKVMGALADK
KCAQGQRVSGILVKRNFNYHIMTPTDLSNYTDLSVGMVTQTQAIPFTGPISLLVSQLRNL
AGDVHQVEKAEKITVKIFESITLVHEAGMVLLEWVANPLNDMYADAVATVVLEVQSNPSA
QKFLDRKEAFDMEVFVERLELMMHDMFGDDCVNFKDSRNLFVTVDGATATIDPETRAVTC
LDDEPLREMIEVAVQRLFEALTPVF
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaacgtaaagcggacgcgacggttcctgcggaggagagcgaccagctgctg
atccgcccgctaggagccggtcaggaagttggacgatcctgcataattctggagttcaaa
ggcagaaaaatcatgctggactgcgggatccatcctggtctggaggggatggacgctctg
ccctacatcgacctgatcgaccctgctgagatcgacctgctgctaatcagccacttccac
ctggaccactgcggagcgcttccctggttcctgcagaagaccagctttaagggacgtact
ttcatgacacacgccaccaaggccatctaccgctggctgctgtccgactacgtcaaagtc
agtaacatctcagcagacgacatgctgtacaccgagacggacctggaggacagcatggag
aagatcgaaaccatcaacttccatgaggtgaaagaagtggcaggcatcaagttctggtgt
taccacgccggccacgttctgggcgccgccatgttcatgatcgagatcgccggcgtcaag
ctgctgtacaccggagacttctcccggcaggaggacagacacctgatggcggcggagatc
cccagcgtgaagccagatatcctcatcacagagtcgacgtacgggacccacatccatgag
aaacgggaggagagagaggcccgcttctgcaacacggtgcacgacatcgtgaaccgcgag
ggccgctgcctgatccccgtgttcgccttgggacgagcccaagagctgctgctcatcctg
gatgagtactggcagaaccacccggagctccacgacattcccatctactacgcctcgtct
ctggccaggaagtgcatggccgtctaccagacctacatcaacgccatgaacgacaagatc
cgcaaggccatcaacgtcaacaaccccttcgtcttcaagcacatcagcaacctgaagagc
atggatcattttgacgacatcggccccagcgtggtgatggcgtcgcctggcatgatgcag
agcggactctccagagagctgtttgagagctggtgcaccgacaggaggaacggcgtcatc
atcgccgggtactgcgtggagggaacgctggccaagcacatcatgactgaacctgaggag
atcaccaccatgtcgggtcagaagcttcctctgaagatgtctgtggactacatctccttc
tcggctcacaccgactaccagcagaccagcgagttcatcagagctctcaaacctccccac
gtgattctggtccacggcgagcagaacgagatggcccgcctgaaggcggctctgatccgg
gagtacgaggacaatgacgaggtccacatcgaggtccacaacccgaggaacaccgaggcc
gtaacgctcaccttcagaggagagaagctggcgaaggtgatgggcgcgctcgcagacaag
aagtgcgctcagggccagagggtctctgggatcctggtcaagaggaactttaactaccac
atcatgaccccaactgacctctccaactacacggatctgtccgtcggcatggtgacccag
actcaggccatcccgttcaccggacccatctccctgctggtgagccagctgaggaacctg
gcaggtgatgtgcaccaggtggagaaggcagagaaaatcacagtgaagatctttgaaagc
atcacgctggttcatgaagccggcatggtgctgctggagtgggtcgccaacccgctcaac
gacatgtacgcagacgccgtcgccactgtggttctggaggtccagtccaatcccagcgcc
cagaagttcctggacaggaaggaggccttcgacatggaggtgtttgtggagcgtctggag
ctcatgatgcatgacatgttcggggacgactgcgtgaatttcaaagacagcaggaatttg
tttgtgacggtggacggcgccacggcaacaatcgacccggagacgagagcggtgacgtgt
ctggacgacgagcctctgagggaaatgattgaagtcgccgtccaacgactctttgaggcc
ctcacgcccgtcttctga
DBGET
integrated database retrieval system
