Poecilia reticulata (guppy): 103457381
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Entry
103457381 CDS
T05149
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103457381 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103457381 (cpsf2)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103457381 (cpsf2)
U7-dependent histone pre-mRNA processing factors
103457381 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
103457381
NCBI-ProteinID:
XP_008395681
UniProt:
A0A3P9NUI3
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Position
LG21:complement(11811335..11819261)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGNGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLNLCHSLADLARVPSPKVVLCSQPDLESGFSRELFTQWCQNAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELDEYVEKEKVKKEAAKKMEQAKEVDVDSS
DESDMEDDLDQPAAVKTKHHDLMMKGEGSRKGSFFKQAKKSYPMFPVHEERIKWDEYGEI
IRIEDFLVPELQATEEEKNKLESGLTNGDEPMDQDLSVVPTKCVSSVENFEIKARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVAKVDTGVMLEEGVKEETEDSE
VPMDTEPELGIDHNATAVAAQRAMKNLFGEDEKEMSEESDVIPTLEPLPLTEISGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNVVAVRRTEPGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacttccattatcaagctgacagccgtgtcaggggtccaggaggaatcggctctttgc
tacctgctgcaggtggatgaatttcgcttcctcctggactgtggatgggacgagaacttc
tcaatggacattattgatgccatgaagcgatatgttcaccaggttgatgcagtcctgctg
tctcaccctgaccccattcacctgggagccctgccctacgctgtgggcaaactgggtctg
aactgcaccatctacgccaccattcctgtctacaaaatgggtcagatgttcatgtatgat
ctatatcagtcgagaaacaacagtgaagatttcacgctcttcaccctggatgacgtggac
agtgcttttgataaaatccagcagctgaaatactcacagattgtcaatctgaaaggaaag
gggcacggtctgtcgatcactcctctcccagccggacacatgatcggaggcaccatttgg
aaaattgtcaaggacggggaggaggaaatagtttatgcagtggacttcaatcataagaga
gaaatccaccttaacggctgcacactggagagcattagtcgaccgtctttactcattaca
gattccttcaatgctgcttatgtacagccacgccgcaaacaaagagacgagcagctgctt
acgaacgtaatggagaccctccgtggtaatggtaatgtccttattgccgtggatacggcc
ggccgcgtgctggagctggcacagctcctcgaccaaatttggaggacgaaggacgctggg
ctcggcgtttacccgctagcgctgctcaacaacgtcagctacaatgtggtggagttctcc
aagtcccaggtggaatggatgagtgacaaactcatgaggtgttttgaggacaaaaggaac
aatccgttccagttccgacacttgaacctttgccacagtctggcagacctggcccgggta
cccagccccaaggtggtgctttgcagccaaccggaccttgagtctggcttctccagggag
ctcttcacccagtggtgccaaaatgctaaaaattccatcatccttacctaccgcaccacg
cctggcaccctggcccgctatctcatcgacaatcctggagaaaagatgctggatttggag
gtcaggaaacgagtaaaactggaagggaaggagctggacgagtatgttgaaaaggagaaa
gtaaagaaggaagcggctaaaaaaatggaacaagccaaagaggtggatgtggattcgagc
gatgagagcgacatggaagacgatctggatcagccggctgcggtgaaaaccaagcatcat
gacctgatgatgaagggcgaggggagccgcaaaggaagtttcttcaaacaggccaaaaag
tcataccccatgttcccggtgcacgaggagagaatcaaatgggacgagtatggagaaatc
atcaggattgaagactttttggttcctgaactgcaagccacagaagaggagaagaacaaa
ctggaatctgggctgacaaatggcgacgaacccatggaccaggatttgtctgtcgttcct
acaaaatgtgtctcaagtgttgagaattttgaaataaaagcgagggtgacgtacatagac
tacgaaggtcgctccgatggcgactccataaagaagatcataaatcagatgaagcccaga
cagcttgtgatcgttcacgggccaccagaagcaagtctagacctggccgagtcctgcaag
gctttcagcaaagacatcaaagtttacacacccaaactgcaggagactgtggacgccacc
agcgagacgcacatctaccaggtgcggctgaaagattccctggtgagctctctgcagttc
tgcaaggccaaagacacggagctggcctggatcgacggcgtgctggacatgcgcgtggcc
aaggtggacactggcgtgatgctggaggagggcgtgaaagaggagacggaggacagcgag
gttcccatggacaccgaacccgagcttggcatcgaccacaacgccacggccgtggcggcg
cagcgcgccatgaagaacctgtttggagaggacgagaaggagatgtcggaggagagcgac
gtcattcccactctggagccgctgcctctcactgagatttcaggccatcagtctgtgttc
atcaacgagcctcggctgtctgacttcaagcaggtcttgctgagagagggcatccaggct
gaatttgtgggtggagttctggtgtgcaacaatgtggtggccgtccgcaggacggagcct
ggacgcatcggcctagaaggctgcctgtgtgacgactactataagatccgggagctgctg
tatcagcagtacgctgttgtgtag
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