Poecilia reticulata (guppy): 103459793
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Entry
103459793 CDS
T05149
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pret
Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pret03016
]
103459793 (rtcb)
Enzymes [BR:
pret01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
103459793 (rtcb)
Transfer RNA biogenesis [BR:
pret03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103459793 (rtcb)
Prokaryotic type
tRNA splicing ligases
103459793 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
103459793
NCBI-ProteinID:
XP_008399876
UniProt:
A0A3P9PZY7
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRTYNDELQFLEKTGSTSWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPNAVVSPGGVGFDI
NCGVRLLRTNLDEQDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaacctacaacgatgagctgcagtttctggagaaaacgggcagcaccagctgg
aggatcaaaaagggctttgttcccaacatgcaggttgaaggagtcttctatgtgaatgat
tccctggagaagctgatgtttgaagagctccggaacgcctgcagaggaggaggtatcgga
gggttcctgccagccatgaagcaaatcgggaatgttgcagctctgcctggaatcgttcat
aggtccatcggactcccagatgtccactctggttacggattcgccatcggcaacatggct
gccttcgacatgaacgatccgaacgcagtggtgtctccaggtggcgtcggctttgacatt
aactgtggcgtccgtctcctgaggaccaacctggacgagcaggacgtccagccggtgaag
gagcagctggcccagtccctgttcgaccacatcccggtcggagttggctccaaaggagtc
atcccaatgggagccaaggatctggaggaggctctggagatgggggtggactggtccctg
agggagggctacgcctgggctgaggacaaggagcactgcgaggagtacggccggatgcta
caggccgaccccaacaaggtgtcgtccaaggccaagaagagaggcctgccacagctggga
acgcttggggcgggaaaccactacgccgagatccaggtggtcgatgagatctacaacgag
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgcgtgatgatccacagc
ggcagccgcggcctcggacatcaggtcgccacagatgctctggttgccatggagaaggcc
atgaagcgggataagatcacagtgaacgaccggcagctggcctgcgcccgcatcacctcc
caggagggccaggactacctgaagggaatggctgctgcagggaactacgcctgggtcaac
cgctcctccatgaccttcctcaccagacaggccttctccaaagtgttcggcaccacgcca
gacgacctggacatgcacgtcatctacgatgtctcccacaacatcgccaaggtggaagag
cacatggtggacggaaagcagaggacgctgctggttcaccggaaaggatccacccgtgcc
ttccctcctcaccaccctctgatcccggtggactaccagctcacaggtcagccggtgctc
atcggagggacgatgggaacctgcagctacgtcctgacaggaaccgaacaaggaatgacg
gaaacgttcggcaccacgtgtcacggagcgggccgcgccctctctcgagcaaagtcccgc
aggaatctggacttccaggacgtcctggataaactggccgatatgggcatcgccatccga
gtggcgtctcccaaactggtgatggaggaggctccagagtcgtacaagaacgtgacggac
gtggtgaacacatgtcatgatgcaggaatcagcaagaaggccatcaaactgaggcccatc
gctgtgatcaaaggctga
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integrated database retrieval system
