Poecilia reticulata (guppy): 103460047
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Entry
103460047 CDS
T05149
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103460047 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pret03021
]
103460047 (supt5h)
03019 Messenger RNA biogenesis [BR:
pret03019
]
103460047 (supt5h)
Transcription machinery [BR:
pret03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103460047 (supt5h)
RNA polymerase I system
103460047 (supt5h)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
103460047 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
DUF6406
Motif
Other DBs
NCBI-GeneID:
103460047
NCBI-ProteinID:
XP_008400240
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MCGESDHSDRRCSRMSDSEDSDFSDNQSERSSDGEAEEVDENEEETASPVGSDKVADEEG
EDLDDDEEEYDEEEDEEDDDRPRKKPKHGGFILDEADVDDEDEDEDRWSEGGEDILEKAN
EEAEASNLDHVVLDEDHSGSRRLQNLWRDSREEALGEYYMRKYAKSSVGEHYAGGPEELS
DDITQQQLLPGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVK
GYIYVESYKQTHVKAAIEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLK
RGLYKDDIAQVDYVEPSQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDA
EKIRSLGGEVSHDGDFMIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEG
IDLEVVTESGKEREHNLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEF
PAHELRKYFRMGDHVKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE
TASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRF
AVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHL
VLAGGSKPRDVTNFTVGGFAPMSPRISSPMHHGGGGAQQRGGGGGGGGFGRGRGRRDNEL
IGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHTGSTSAH
GRTPMFGSQTPMYGAGSRTPIYGSQTPMHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSN
PNTPSRNDEEYDFGFDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMY
NPEQYSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGFQNTHSPASYHPTPSPMAYQASPSP
SPVGYSPMTPGAPSPGGYNPHTPGSNIEQGGGDWVTTDILVRVKDSFMDLMGQVGVIRSV
TGGMCSVFMQDSEKVVSVSSDHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRM
ELDDQLKILNLRFLGRLEH
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggagagagtgaccactctgatagaaggtgcagcaggatgtccgacagcgaggac
agcgacttttctgacaaccagagcgagcggagcagcgacggggaggccgaggaggtggat
gagaatgaggaggagacagccagccctgtcggcagcgataaagtagctgatgaggagggg
gaggacctggatgatgatgaggaggagtatgatgaagaggaggacgaggaagacgacgac
cggccgaggaagaagccgaaacacggagggttcatcctggacgaagccgatgtggacgat
gaagatgaggatgaggatcggtggtcggaaggaggagaggacattctggagaaagccaac
gaagaggctgaagcttccaacctggaccacgtggttctggatgaagaccactctggatcc
aggcggctgcagaacctctggagggactccagggaggaggcgctgggcgaatactacatg
aggaaatacgccaagtcctctgtgggagagcattacgccggaggtccagaggagctatct
gatgacatcacccagcagcagctacttcctggagtcaaggacccaaacctgtggaccgtg
aaatgtaagatcggcgaggagagggcgaccgccatcgctctgatgaggaagttcatcgcc
taccagttcactgacacgcctctccagatcaagtcggtggtggcgcccgaccacgtcaaa
ggctacatctacgtggagtcgtacaagcagacgcacgtgaaggccgccatcgagggcatc
ggcaacctgcgcatgggcctgtggaaccagcagatggttcccatcaaggagatgaccgac
gtcctgaaggtcgtcaaggaggtcaccaacctgaagcccaagagctgggtccggctcaag
agaggcctgtacaaggacgacatcgcccaggtggactacgtggagcccagtcagaacacc
atctccctgaagatgattccccgcatcgacctggaccggatcaaggccaagatgagtctg
aaggactggttcgccaagaggaagaagttcaagaggcccgcgcagcgcctgtttgatgcc
gagaagatcaggtctctgggtggcgaggtcagccatgatggagacttcatgatctttgag
gggaaccgctacagccgcaaaggcttcctgttcaaaagcttcgccatgtccgccgtgatc
acagacggagtgaagcccacgctgtcggagctggagaagtttgaagaccagccagagggg
atcgacctggaagtggtcacggagtcgggtaaggagcgtgaacacaacctgcaggccggg
gacaacgtggaggtgtgtgagggagagctgatcaacctgcaggggaagatcctgagcgtg
gacggcaacaagatcaccatcatgcccaaacacgaagacctgaaggacccgctggagttc
cccgcccacgagctcaggaagtacttccggatgggcgaccacgtgaaggtcatcgccggg
cgctacgagggcgacaccggtctcatcgtcagagtggaggagaacttcgtcatcctcttc
tcggacctcaccatgcacgagctgaaggtgctgcccagagacctgcagctttgctcggag
acggcgtcgggcgtggacgtcggggggcagcatgagtggggcgagctggtgcagctggac
ccgcagacggtgggcgtcatcgtccggctggagagggagacgttccaggttctgaacatg
cacgggaaggttctgacggtgcgccaccaggcggtgaaccgcaggaaggacaaccgcttc
gccgtggcgctggactccgagcagaacaacatccacgtcaaggacatcgtgaaggtcatc
gacgggccgcactcgggtcgtgaaggggagatccgccatctgttccgcggcttcgccttc
ctgcactgcaagaagctggtggagaacggagggatgttcgtctgtaagaccagacacctg
gttctggccggaggctccaagccgagagacgtgaccaacttcacggtggggggcttcgcc
ccgatgagcccccggatcagcagccccatgcaccacggcgggggaggcgctcagcagaga
ggcggcggcggtggcggcggagggtttgggcgtggccggggacgcagagacaacgagctg
attggtcagaccgtccggatctcccagggtccttacaaaggatacatcggcgtggtgaag
gacgcgacggagtccacggcccgcgtggagctgcactccacctgccagaccatctctgtg
gaccgccagaggctgaccaccatgggagcgaagaggcacaccgggtcgacctcggcccac
ggccgcacccccatgttcggctcccagacccccatgtacggcgccggatccaggacgccc
atctacggctcgcaaacccccatgcacgacggaagccggacgcctcactacggctcccag
accccgctgcatgatgggagcaggactcctggtcagagcggcgcctgggaccccagcaac
cccaacacaccttccaggaacgacgaagaatacgactttggcttcgacgacgagccgtcg
ccgtcgccgcagggctacggcgggacccccaacccccagacgccgggctacccagaggtc
ccctcccctcaggttaacccccagtacaacccgcagaccccgggaacgccggccatgtac
aacccggagcagtactcgccgtacgcggcgccgtcgccgcagggctcctaccagcccagc
cccagtccccagagctaccaccaggtggcgccctctcctgtcggcttccagaacacgcac
tccccggccagctaccaccccaccccctcccccatggcctaccaggccagcccgagcccc
agcccagtgggctacagccccatgacgcccggagcgccctctcctgggggatacaacccc
cacactcccggatccaacatcgagcaaggcggcggcgactgggtgaccaccgacatcctg
gtccgggtcaaagactccttcatggacctgatgggacaggtcggagtgatccggagcgtc
acgggcgggatgtgctccgtgttcatgcaggactctgagaaggtggtgagcgtcagcagc
gaccatctggagcccgtcaccccgaccaagaacaacaaggtgaaggtgatcctgggggag
gaccgcgaggccacagggatcctgctgagcatcgacggagacgacggcatcgtccgcatg
gagctggacgaccagctgaagattctcaacctgcggttcctgggccgcctggagcactga
DBGET
integrated database retrieval system
