KEGG   Poecilia reticulata (guppy): 103463330
Entry
103463330         CDS       T05149                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret03018  RNA degradation
pret03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pret00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103463330 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103463330 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pret03019]
    103463330 (lsm4)
   03041 Spliceosome [BR:pret03041]
    103463330 (lsm4)
Messenger RNA biogenesis [BR:pret03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103463330 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103463330 (lsm4)
Spliceosome [BR:pret03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103463330 (lsm4)
SSDB
Motif
Pfam: LSM UNC119_bdg
Other DBs
NCBI-GeneID: 103463330
NCBI-ProteinID: XP_008404836
UniProt: A0A3P9P4E8
LinkDB
Position
LG4:11671817..11674387
AA seq 188 aa
MHVFSSRGQHYKIWSVNIRRRRRSVGGKSRVIHLNRQEIETTIIIMLPLSLLKTAQNHPM
LVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI
IDMVKEEVVSKGRGRGGAQQNKQQGKGRGGPGRGVFGGRGRGMSGPGRGQQPPTDKKTGK
AQGMKNQH
NT seq 567 nt   +upstreamnt  +downstreamnt
atgcacgttttcagcagcagggggcagcactataagatatggtccgttaatattaggcgg
cgaagaagaagtgtaggtgggaaaagccgtgttattcatctcaacagacaagaaatagaa
acaactataatcataatgcttccattgtctttgttgaaaactgcccagaaccatcccatg
ctggttgagcttaagaatggggaaacctacaacggccacctggtgagctgcgacaactgg
atgaacatcaacctgagagaagtcatctgtacatccagggatggagacaagttctggagg
atgccagagtgctacatccgaggaagcacgatcaagtacctgcgaatccccgatgagatc
atcgacatggtgaaggaggaggtggtgtcgaagggacgcgggcgcggcggcgcccagcag
aacaagcagcagggcaaaggaagaggaggacccggccgaggtgtgtttggcggccgcggc
agagggatgtccggtcctgggcggggccagcagccgccgaccgataagaaaacaggcaaa
gctcagggaatgaagaaccagcactga

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