Poecilia reticulata (guppy): 103463333
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Entry
103463333 CDS
T05149
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03013
Nucleocytoplasmic transport
pret03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103463333 (upf1)
03015 mRNA surveillance pathway
103463333 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103463333 (upf1)
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103463333 (upf1)
5.6.2.5 RNA 5'-3' helicase
103463333 (upf1)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103463333 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103463333 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
103463333
NCBI-ProteinID:
XP_008404838
LinkDB
All DBs
Position
LG4:complement(11640988..11660236)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQING
PDEGLHNGGMDDSVAKTSQLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGTGPGQMA
AMNIPIPFNLMMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRARGSAHQGNGPNSQV
SQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaagaa
gcggagctgctcggagcggacacccagggctccgagtacgacttcactgacttcactctt
ccgagccagacgcaaacacaaggccagacccagagccagttggacggacagatcaatggt
cctgatgagggtcttcacaatggaggaatggatgattctgtggccaaaaccagccagttg
ttgggcgagctcaactttgaggaggatgaagaagacacctactacaccaaagatcttcca
atacacgcatgcagctactgcggcatccatgacccagcgtgtgtggtgtactgcaacacc
agtaagaagtggttctgtaacggccgtggcaacacgtctggcagccacattgtgaaccac
atggtgagggccaaatgtaaagaggtgactctgcataaagacgggcctctgggcgaaacg
gtgctggagtgctacaactgcggctgtcgcaacgttttcctgctgggcttcatcccggct
aaagccgactctgtggtggtgctgctctgcaggcagccgtgcgcgagccagagcagcttg
aaagacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctg
tcctggttggtgaagatcccgtcggagcaggagcagctccgcgcccggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggacaatcctggcgctactttggaagac
ctggagaaacccggagtggatgaagaaccccagcatgtgctgctgcgctacgaagacgcc
taccagtaccagaacatctttggccctttggtcaaactggaggccgattatgacaaaaag
ctaaaggagtcacagactcaagacaatataaccgtcaggtgggacctggggttaaacaaa
aagcggattgcatatttcacacttcccaagacggattcaggtgatatgcggctgatgcag
ggcgacgagatctgcctgcgctacaaaggagacctggctcctctgtggaaaggcatcggt
cacgtcatcaaagtccccgacaactatggggatgaaattgccattgagctgcgcagcagc
gtcggagcgcctgtggaaatccctcataacttccaagtggattttgtttggaaatcaact
tcctttgacaggatgcagagcgccctgaagacgtttgccgtcgatgaaacctccgtgtcc
ggttacatttaccacaaacttctgggtcacgaggtcgaagacgtcaccatcaagtgccag
ctgccgaagcgcttcaccgctccgggcctgccggacctgaaccactcacaggtttatgct
gtgaagactgtgctgcagcggccgctcagtctcatccagggtccgcctggcaccggcaag
accgtcacctccgctacgatcgtgtaccacctgtcccggcaggggaatggaccagtcctg
gtgtgcgctcccagtaacatcgccgtggatcagctgacggagaagatcgacaagaccggg
ctgaaggtcgtcaggctgtgcgccaagagccgggaggccatcgagtctccggtctctttc
ctggcgctccacaaccagatcagcaacatggacagcatgccagagctccagaagctgcag
cagctgaaggatgagaccggagagctgtcgtctgctgacgagaagcgttaccgggccctg
aagcgcaccgccgagagggagctgctcatgaacgctgatgtgatttgctgcacctgcgtt
ggagccggagatccccgtctggccaagatgcaattccggtccatcctgatcgacgagagc
acccaggccaccgagccggagtgcatggtcccggtggtgctgggagcaaagcagctgatt
ctggtgggcgaccactgccagctgggtccggtggtgatgtgtaagaaagcggcgaaggca
ggtttgtctcagtccctgtttgagcgactggtggtgctgggaatccggccgatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccgtccaacatcttctacgag
ggctccctgcagaacggcgtcacagcagctgatcgcatcaagaaaggctttgacttccag
tggccgcagccggacaaacccatgttcttctacgtgactcagggtcaggaggaaatcgcc
agttctggaacctcatacctgaacaggacggaggcagcaaacgtggagaaaatcaccacc
aggctgctgaaggcgggagcgaaaccggaccagatcggcatcatcacgccgtacgagggc
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaagctgtac
cagcaagtggaaatcgccagtgtggacgccttccagggcagagagaaggacttcatcatc
ctgtcctgcgttcgagccaacgagcatcagggcatcggcttcctgaacgacccgcggcgc
ctcaatgtggcactgaccagagcaaagtacggcgtgatcatcgtggggaaccccaaggcg
ctgtccaagcagccgctgtggaacaacctgctgaactactacaaggagcagaaggttctg
gtggagggcccgctcaacaacctcagagagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaacccggggggacgtttcatgagcaccgccatgtacgacgcccgc
gaggcgctcatcccgggctccgcctacgaccgcagcagcgccgctggacgtccgtccaac
atgtacttccaaactcacgatcagatcgggatgatcgggaccgggccgggtcagatggcg
gccatgaacatccccatacccttcaacctgatgatgcccccgatgcctccgcccagctat
ctgggtcagaccaacggcccggctgcaggccgcggtgccatgaagggtaaacctggccgt
ggaggaaggcagcgggcccgcggctcggctcaccagggcaacgggcccaacagccaggtc
agccaggacggggcttcccagtccttctcccaggggccgctgactcagggctacatctcc
atgagccagccctctcagatgagccaacctggcctctcccagccagagttgtcccaggat
agctacctgggcgatgagttcaagtcccagatcgacgtggctctgtcccaggactccact
taccagggtgaacgtgcgtaccagcatggcggggtgaccggactgtcacagtactaa
DBGET
integrated database retrieval system
