Poecilia reticulata (guppy): 103464419
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Entry
103464419 CDS
T05149
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
pret04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103464419 (col2a1b)
04518 Integrin signaling
103464419 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103464419 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103464419 (col2a1b)
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103464419 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
103464419
NCBI-ProteinID:
XP_008406722
LinkDB
All DBs
Position
5:complement(10963455..11015225)
Genome browser
AA seq
1491 aa
AA seq
DB search
MLSFMDSRTVLLLIASQVCLLAVVRCQLEDDQEDASACRHEGQLYNDKDIWKPEPCRICV
CDTGTVLCDDIVCEELRDCPKPEIPFGECCPICPADQPPPFGGPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGSRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMTSGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEAGEPGQS
GPMGPRGPSGPPGKPGDDGEPGKPGKSGDRGPTGPQGARGFPGTPGLPGIKGHRGYPGLD
GTKGETGAVGSKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPV
GLQGAPGPQGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGHKGAPGERGPP
GASGAKGATGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGGTGESGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDVGEKGPE
GAPGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAAGVRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGEAGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDPGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGALGAP
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQPGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRTGDS
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVNPKPAKIPRKNWWSSKSKERKHVWFGEAMNGGFHFSYGDDSLAPNTASIQMT
FLRLLSTETSQNLTYHCKNSVAYLDDSTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCARHTGQWGKTVFEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattccaggactgtactgcttcttatagcatcccaagtttgtcta
ttagccgttgtgagatgtcaactggaagatgaccaggaggatgcttctgcctgtagacac
gaaggacagctttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgacacgggaacggttctgtgtgatgacattgtctgcgaggagctaagagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgccctgctgaccagccgccacct
tttggaggaccaggagccaagggtcagaagggtgaacccggagacattacagatgttgta
ggaccaagaggaccatccggccccatgggcccaccaggagagcaaggaccccgaggatca
agaggagacaaaggagagaaggggagccccggtcctcgtggcagagatggtgaacctggc
acccctggaaaccctggaccccctgggcctccaggacctaatggaccccctggacttggt
ggaaactttgctgctcagatgaccagcggttttgatgagaaggccggaggcgcacagatg
ggtgtgatgcaaggaccaatgggccccatgggacccagaggaccacctgggccctcagga
tcacctggcccacaaggtttccaaggcagcccaggagaagctggagagcctggacaatct
ggccccatgggtccccgtggcccctccggacctcctggaaaacccggagatgatggtgaa
ccaggtaaaccagggaaatcaggtgaccgtggacccactggacctcagggagctcgtggt
ttcccaggaactcctggtctgccaggcatcaagggacacagaggttatccaggtcttgac
ggtacaaagggagaaactggtgctgttggttcgaagggtgaggctggtgctcctggcgag
agcggcgctcccggacccatgggacctcgtggtttgcctggggagagaggacgtcccggg
tccactggagctgctggtgcacgtggaaacgatggcttgcccggtcctgctggtcctcca
ggccctgttggtccagctggagctccaggcttccccggatctcctggtacaaagggtgaa
gctggtcctactggcgctcgtggtcccgaaggagcccaggggccccgtggagagtcaggc
actcctggatcatctggaccctctggtgcttctggtaatcctggcactgatggtatccct
ggagctaaaggctcagcaggtgctccaggtatcgcaggtgctcctggcttccctggacct
cgtgggcctcctggacctcagggagcaactggacctcttggaccaaaaggaacatctgga
gatccaggaatcgccggattcaaaggggaagctggaccaaagggagaaattggaccagtt
ggacttcagggagcccctggccctcaaggagaagaaggcaagagaggacccagaggtgag
cctggttctgctggacctctaggacctccaggagaaagaggagctcctggtaaccgtggt
ttccctggtcaggatggtctggctggtcacaagggagccccaggtgagcgcggaccccct
ggggccagtggtgccaagggagccactggtgaccctggccgtcctggagagtctggtctt
cctggtgcaaggggtctgactggtcgtcctggtgatgctggacctcagggcaaagttggg
ccttctggagctccaggtgaggacggacgtccaggaccccccggccctcagggagccaga
ggacagcctggtgttatggggttccctggacccaaaggaggaactggtgaatctggcaaa
tctggtgagaaaggactggccggagctcctggtctgagaggtctgcccggaaaagatgga
gaaacgggcgcggctggaccccctggccctgctggccctgctggggagagaggagagcaa
ggacagcctggtccctctggtttccagggtcttccagggcctcctggtcctcctggtgag
ggaggcaaaccgggagaccagggcgttccaggagaagctggagctgctggtgccaccgga
cccagaggagagcgtggttttccaggagagagaggagctgctggaccgcaaggtttgcag
ggacccagaggtctgcctgggactcctggaactgatggacccaagggagccattggacct
gctggaggcccaggagctcagggtcccccaggcctgcagggtatgccaggagagagagga
gctgctggcattcctggacccaagggagacaggggtgatgttggagaaaaaggacctgaa
ggtgctcccggcaaagatggcgccagaggtcttactggtccaattggtcctcctggtcct
ggtggtccaaatggcgagaagggtgaatctggacctgctggaccatctggagctgctggt
gttcgtggtgcacctggagacagaggagagactggacctcctgggcctgctgggtttgct
ggacctcctggagctgatggccagcctggaaccaaaggagagcagggagaagctggacag
aagggagatgctggagcccctggaccccaaggaccatccggtgcccctggcccttcaggt
cctacaggtgtttctggacctaaaggtgcacgtggtgcccagggtcctcctggtgccact
ggtttccctggagctgctgggcgagttggacctcctggccccaacggtaatcctggacct
gcaggtcctgctggccctcctggtaaagacggaccaaaaggagtgagaggagacggtgga
cctccaggcagacagggcgacgctggactacgcggtcctgcaggagctccaggagagaag
ggcgaccctggagaggatggtcctcctggtccgctaggtccctcgggtcctcagggattg
gctggtcagcgcggtattgttggtctacccgggcagagaggtgaaagaggtttccctggt
ttgcctggaccttctggtgagcctggaaagcagggagctgctggtggtcctggagaccgt
ggaccacctggaccagtcggacctcctgggctcactggtcctgctggagaacctggaaga
gagggcaaccctggatctgatggacctcctggtagagatggttctcctggaattaagggt
gaccgtggcaacaccggtcctgctggtgctcccggtgctccaggtgctcttggggctccc
ggcccagtcggtcccaccggaaaacagggagacagaggggagtctggtgcccaaggacca
gctggacctccaggacctgccggtgccagaggaatgcctggaccccaaggcccccgtggt
gataagggtgaagctggagagtctggtgagagaggtcagaaggggcacagaggtttcacc
ggtctgcagggtctccctggaccaccaggtcaacctggagaccagggtgccactggacct
gctgggccttctggacaaagaggaccacctggacctgttggtcctgctggaaaggacggg
tcaaatggcttaccagggcccatcggaccccctggacctcgtggtcgtactggagactct
ggtccctctggtcctcctggaaaccctggaccccctggtcctcctggacctcccggtcct
ggtattgacatgtctgcattcgctggtctgggtcaaacagaaaagtctcccgatcccctg
aggtacatgagggcagaccaggccgctgggaatctccgtcaacatgacgcagaggtcgat
gccaccctcaagtccctcaacaaccagattgagaacatccgcagcccagagggatccaag
aagaaccctgcccgcacctgcagagacctgaagctctgccatcccgactggaagagcggt
gagtactggattgatccaaatcagggctgcactgtagatgcaatcaaggttttctgcaac
atggagactggggagtcctgtgtgaaccccaaacccgccaagatcccacgcaagaactgg
tggtccagcaagagcaaagaacgcaaacatgtctggttcggagaggcaatgaacggagga
ttccatttcagttacggtgacgacagcctggcacccaacaccgcctccattcagatgact
ttcctgaggttgctgtcaacagagacctcccaaaatctcacttaccactgtaagaacagc
gtggcgtacctggatgattcaacaggcaacctgaagaaggccgtcctgctgcaaggctcc
aacgatgtggagatcagagccgagggcaacagccgcttcacctacagtgtcatggaagac
ggctgcgcgagacacacagggcagtggggtaagacagtgttcgaatacaggtcgcagaag
acctcccgtctgcccattgtggacattgcccccatggatatcggtggagcagatcaggag
tttggagttgatattgggccagtttgcttcttgtaa
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integrated database retrieval system
