Poecilia reticulata (guppy): 103467632
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Entry
103467632 CDS
T05149
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103467632
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103467632
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103467632
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103467632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
103467632
NCBI-ProteinID:
XP_008412414
LinkDB
All DBs
Position
LG7:complement(19917096..19942080)
Genome browser
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQQEDDQEAGGCIQDARLYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADATAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPPGEQGTRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMSQGFDEKAGSVAMGVMQGPMGPMGPRGPPGPSGAPGTQGFQGAPGETGEPGPAGAIG
PRGPPGPSGKPGSDGDPGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGETGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAGPLG
APGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLAGKDGETGPSGPSGPAGPAGERGEQGQPG
PPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQGPRG
LPGTPGSDGPKGAIGPAGALGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAGPPG
ADGQPGAKGELGESGQKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGAAGPAGSAGKDGPKGVRGDAGPPGRTGDAGLRGPAGPPGEKGELG
PTGEPGADGPSGPQGLAGGRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRGPPG
PVGPPGLTGPSGEPGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGEAGAQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTGLQG
LPGPPGPAGDGGPAGPAGSSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDSTIK
SLNTQIENLRSPDGTQKNPARSCSDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNMETG
ETCVYPSIAKVPKKNWWTSKSKDRKHIWFGETMNGGFHFSYAQEGPAASAANVQLTFLRL
LSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKS
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggtcagatgtcagcaagaagatgaccaggaggcaggcggctgcatccaggac
gcccggctgtataatgataaggatgtgtggaagccagagccgtgccgcatctgtgtgtgc
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagaatgctgccccatctgccccgctgatgccactgcccccatt
gaggcgtttggtgccaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggccccccaggtgagcaggggacgcgaggagaagct
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggcgaacccggcaca
cctggaaaccccggaccacctggaccacccggcccaccagggctgggagggaactttgct
gctcagatgtctcaaggctttgatgaaaaggctggaagtgttgcaatgggtgtgatgcaa
ggaccaatgggccccatgggtccccgtggcccccctggacctagcggagctcctgggact
cagggtttccaaggagcacccggagagactggagagcccggtccagctggagcgattgga
cctcgagggccacctggaccatctggaaaaccaggaagtgacggtgatcctggaaaacct
gggaaagccggtgagcgcggaccagctgggcctcagggagctcgtggattccctgggaca
cctggacttcctggaatcaaaggacacagaggtcacccaggtctggatggagcaaaggga
gagactggtgctgctggagccaagggtgagactggtgctgctggagaaagcggcagtaat
gggcctatgggccctcgaggtctacctggtgaaaggggacgtccaggagcttctggagct
gcaggagcccgtggaaacgatggcttgcctggtccggctggtcccccgggcccagttggt
cctgctggagctcccggtttcccaggatccccaggctccaagggtgaagcgggtcctact
ggcgcccgtggagctgaaggagcacagggaccccgcggagaggccggcacgccaggatca
cctggaccagctggggcggggggcaaccccggcactgatggtattcctggggctaaaggt
tctgctggggctcctggaattgctggtgcacctggcttccccggcccccgaggcccacct
ggaccacagggagcaactggacctcttgggcccaaaggacaatctggagatcctggtctt
ccgggactaaagggtgaatctggaccaaaaggagagctgggccccgctgggcctctagga
gctcctggccctgctggagaggaagggaagcggggtgcgaggggagagccgggaactgct
ggaccaaacggacctccaggagaaagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggagcccctggtgaccgtggcgttcctggtgctgctggg
cctaaaggtgccactggagaccctggacgtacaggcgaggctggcctcccaggagccaga
ggtcttactggtcgtcctggagatgctgggccgcagggcaaagttggagcttctggcgct
ccaggtgaagacgggcgtcccggtccacctggtcccctgggcgcacgcggacagcccgga
gtcatgggattccccggaccaaaaggagcaaatggtgaacctggaaaaccaggagagaag
ggactcgttggtcgacctggtctgagaggactagctggaaaagatggtgagactggtcct
tctggaccttctggacctgctggacctgctggagagagaggagagcaaggacagcctgga
cctcctggcttccagggtctgcctggtccaactggttccccaggagagggcggaaaacct
ggagatcagggtgttcctggagagggtggagctcctggtgctgttggacccagaggtgag
cgtggtttccctggcgagcgcggtggcgctgggcctcagggtcttcaagggccgcgcgga
cttcctgggacaccaggaagtgacggacccaagggagcaattggaccagctggagctctt
ggagctcaagggcccccgggcctgcagggtatgcctggagagaggggagctggaggcatc
ccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggcgctcctgga
aaagacggtggcagaggtttgactggtcctattggtccccctggcccatctggacccaac
ggtgccaagggtgagactggaccaactggtccttctggtgctcctggggttcgtggtgct
cctggtgaccgcggtgagcttggtcctcctgggcctgcgggcttcgctggacctcctggt
gcagatggtcagccaggtgctaagggagagctcggtgagtctggacagaagggagaggct
ggtgcttctggacctcaggggccctctggagctcctggacctgtgggacctactggcgta
tctggacctaaaggagcgcgcggtgcccagggagcgcctggagcaacaggtttccctggt
gctgctggcagagttggacctcctggtcccaatggtaaccctggcgctgccggtcctgct
ggttccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcctccaggacgg
acaggagacgctgggcttcgtggaccagccggacctccaggagagaagggagagctggga
ccgacgggagagcctggagctgatggcccttcagggccgcagggtttggctggaggtcgt
ggtattgttgggctgcccggtcagcgcggtgagagaggtttccctgggctccccggacct
tctggagagcctggtaaacagggagcatccggtggtgctggtgaccgaggaccgcctgga
cctgttgggcctcctggactcactggaccttctggagagccaggcagagagggcacgcct
ggatccgatggacctcctggtagagatggagctgctggagtcaagggagagcgaggtaac
accggtcctgcaggcgctcccggagctccaggcgcccctggggctcccgggccggtcggg
cccctcggcaaacagggagacagaggagaggctggcgctcaaggacctgcaggaccacca
ggactggctggcgctagaggaattgcgggaccccaaggaccacgtggagataaaggggag
gcgggtgagtctggagagagaggtcagaagggtcaccgcggcttcaccggtctgcagggt
cttcctggacctccaggtcctgctggagatggcggacccgccggacctgctggatcaagc
ggcgctaagggacctcctggtccacttggacctgctggcaaagacggatctaatggacag
cctggtcccattggaccccccggacctcgaggacgctctggagaaactggtcctgctggt
cctcctgggaaccccggccctcctggtcctcctggcccaccaggtccaggcattgacatc
tccgcctttgctggcctgggccagactgagaagtctcctgatcctctcaggtacatgagg
gctgacgaggcctccagctccctgaggcagcatgacattgaggtcgattccacaatcaag
tccctcaacacccagattgagaacttgcgcagccctgacggcacccagaagaacccggct
cgctcttgcagtgacctaaagctgtgccaccccgagtggaagagcggtgactattgggtg
gatcctaacctcggaagcacagccgacgcaatcaaggtcttctgcaacatggagacagga
gagacctgcgtctacccaagcatcgccaaagtaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggtttggagaaacaatgaatggcggattccacttcagc
tatgctcaggaaggtcctgctgccagcgctgccaacgtccagctgaccttcttgaggctt
ctgtccactgaagcgtcccagaacttcacttatcactgcaagaacagcattgcctacatg
gatcaggcctcaggaaacctgaaaaaggcgttgctactgcagggctccaacgacgtggag
atccgcgccgagggcaacagtcgcttcacgtacagcgtgttggaggatggctgcaagagt
cacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtagacattgctccaatggacatcggaggagcagatcaagaattcggagtggat
ataggcgccgtctgcttcttgtaa
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integrated database retrieval system
