Poecilia reticulata (guppy): 103467632
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Entry
103467632 CDS
T05149
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
pret04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103467632 (col2a1a)
04518 Integrin signaling
103467632 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103467632 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103467632 (col2a1a)
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103467632 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
103467632
NCBI-ProteinID:
XP_008412414
LinkDB
All DBs
Position
7:23922837..23947873
Genome browser
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQQEDDQEAGGCIQDARLYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADATAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPPGEQGTRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMSQGFDEKAGSVAMGVMQGPMGPMGPRGPPGPSGAPGTQGFQGAPGETGEPGPAGAIG
PRGPPGPSGKPGSDGDPGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGETGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAGPLG
APGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLAGKDGETGPSGPSGPAGPAGERGEQGQPG
PPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQGPRG
LPGTPGSDGPKGAIGPAGALGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAGPPG
ADGQPGAKGELGESGQKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGAAGPAGSAGKDGPKGVRGDAGPPGRTGDAGLRGPAGPPGEKGELG
PTGEPGADGPSGPQGLAGGRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRGPPG
PVGPPGLTGPSGEPGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGEAGAQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTGLQG
LPGPPGPAGDGGPAGPAGSSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDSTIK
SLNTQIENLRSPDGTQKNPARSCSDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNMETG
ETCVYPSIAKVPKKNWWTSKSKDRKHIWFGETMNGGFHFSYAQEGPAASAANVQLTFLRL
LSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKS
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggtcagatgtcagcaagaagatgaccaggaggcaggcggctgcatccaggac
gcccggctgtataatgataaggatgtgtggaagccagagccgtgccgcatctgtgtgtgc
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagaatgctgccccatctgccccgctgatgccactgcccccatt
gaggcgtttggtgccaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggccccccaggtgagcaggggacgcgaggagaagct
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggcgaacccggcaca
cctggaaaccccggaccacctggaccacccggcccaccagggctgggagggaactttgct
gctcagatgtctcaaggctttgatgaaaaggctggaagtgttgcaatgggtgtgatgcaa
ggaccaatgggccccatgggtccccgtggcccccctggacctagcggagctcctgggact
cagggtttccaaggagcacccggagagactggagagcccggtccagctggagcgattgga
cctcgagggccacctggaccatctggaaaaccaggaagtgacggtgatcctggaaaacct
gggaaagccggtgagcgcggaccagctgggcctcagggagctcgtggattccctgggaca
cctggacttcctggaatcaaaggacacagaggtcacccaggtctggatggagcaaaggga
gagactggtgctgctggagccaagggtgagactggtgctgctggagaaagcggcagtaat
gggcctatgggccctcgaggtctacctggtgaaaggggacgtccaggagcttctggagct
gcaggagcccgtggaaacgatggcttgcctggtccggctggtcccccgggcccagttggt
cctgctggagctcccggtttcccaggatccccaggctccaagggtgaagcgggtcctact
ggcgcccgtggagctgaaggagcacagggaccccgcggagaggccggcacgccaggatca
cctggaccagctggggcggggggcaaccccggcactgatggtattcctggggctaaaggt
tctgctggggctcctggaattgctggtgcacctggcttccccggcccccgaggcccacct
ggaccacagggagcaactggacctcttgggcccaaaggacaatctggagatcctggtctt
ccgggactaaagggtgaatctggaccaaaaggagagctgggccccgctgggcctctagga
gctcctggccctgctggagaggaagggaagcggggtgcgaggggagagccgggaactgct
ggaccaaacggacctccaggagaaagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggagcccctggtgaccgtggcgttcctggtgctgctggg
cctaaaggtgccactggagaccctggacgtacaggcgaggctggcctcccaggagccaga
ggtcttactggtcgtcctggagatgctgggccgcagggcaaagttggagcttctggcgct
ccaggtgaagacgggcgtcccggtccacctggtcccctgggcgcacgcggacagcccgga
gtcatgggattccccggaccaaaaggagcaaatggtgaacctggaaaaccaggagagaag
ggactcgttggtcgacctggtctgagaggactagctggaaaagatggtgagactggtcct
tctggaccttctggacctgctggacctgctggagagagaggagagcaaggacagcctgga
cctcctggcttccagggtctgcctggtccaactggttccccaggagagggcggaaaacct
ggagatcagggtgttcctggagagggtggagctcctggtgctgttggacccagaggtgag
cgtggtttccctggcgagcgcggtggcgctgggcctcagggtcttcaagggccgcgcgga
cttcctgggacaccaggaagtgacggacccaagggagcaattggaccagctggagctctt
ggagctcaagggcccccgggcctgcagggtatgcctggagagaggggagctggaggcatc
ccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggcgctcctgga
aaagacggtggcagaggtttgactggtcctattggtccccctggcccatctggacccaac
ggtgccaagggtgagactggaccaactggtccttctggtgctcctggggttcgtggtgct
cctggtgaccgcggtgagcttggtcctcctgggcctgcgggcttcgctggacctcctggt
gcagatggtcagccaggtgctaagggagagctcggtgagtctggacagaagggagaggct
ggtgcttctggacctcaggggccctctggagctcctggacctgtgggacctactggcgta
tctggacctaaaggagcgcgcggtgcccagggagcgcctggagcaacaggtttccctggt
gctgctggcagagttggacctcctggtcccaatggtaaccctggcgctgccggtcctgct
ggttccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcctccaggacgg
acaggagacgctgggcttcgtggaccagccggacctccaggagagaagggagagctggga
ccgacgggagagcctggagctgatggcccttcagggccgcagggtttggctggaggtcgt
ggtattgttgggctgcccggtcagcgcggtgagagaggtttccctgggctccccggacct
tctggagagcctggtaaacagggagcatccggtggtgctggtgaccgaggaccgcctgga
cctgttgggcctcctggactcactggaccttctggagagccaggcagagagggcacgcct
ggatccgatggacctcctggtagagatggagctgctggagtcaagggagagcgaggtaac
accggtcctgcaggcgctcccggagctccaggcgcccctggggctcccgggccggtcggg
cccctcggcaaacagggagacagaggagaggctggcgctcaaggacctgcaggaccacca
ggactggctggcgctagaggaattgcgggaccccaaggaccacgtggagataaaggggag
gcgggtgagtctggagagagaggtcagaagggtcaccgcggcttcaccggtctgcagggt
cttcctggacctccaggtcctgctggagatggcggacccgccggacctgctggatcaagc
ggcgctaagggacctcctggtccacttggacctgctggcaaagacggatctaatggacag
cctggtcccattggaccccccggacctcgaggacgctctggagaaactggtcctgctggt
cctcctgggaaccccggccctcctggtcctcctggcccaccaggtccaggcattgacatc
tccgcctttgctggcctgggccagactgagaagtctcctgatcctctcaggtacatgagg
gctgacgaggcctccagctccctgaggcagcatgacattgaggtcgattccacaatcaag
tccctcaacacccagattgagaacttgcgcagccctgacggcacccagaagaacccggct
cgctcttgcagtgacctaaagctgtgccaccccgagtggaagagcggtgactattgggtg
gatcctaacctcggaagcacagccgacgcaatcaaggtcttctgcaacatggagacagga
gagacctgcgtctacccaagcatcgccaaagtaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggtttggagaaacaatgaatggcggattccacttcagc
tatgctcaggaaggtcctgctgccagcgctgccaacgtccagctgaccttcttgaggctt
ctgtccactgaagcgtcccagaacttcacttatcactgcaagaacagcattgcctacatg
gatcaggcctcaggaaacctgaaaaaggcgttgctactgcagggctccaacgacgtggag
atccgcgccgagggcaacagtcgcttcacgtacagcgtgttggaggatggctgcaagagt
cacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtagacattgctccaatggacatcggaggagcagatcaagaattcggagtggat
ataggcgccgtctgcttcttgtaa
DBGET
integrated database retrieval system
