Poecilia reticulata (guppy): 103467939
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Entry
103467939 CDS
T05149
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03015
mRNA surveillance pathway
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103467939 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
103467939 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103467939 (pabpc1l)
03041 Spliceosome [BR:
pret03041
]
103467939 (pabpc1l)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103467939 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
103467939 (pabpc1l)
Spliceosome [BR:
pret03041
]
Complex C
Other components
Complex C specific factors
103467939 (pabpc1l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_MUD2_C
RRM_ACIN1
RRM_3
RBD_RDR6
DUF3137
DUF7658
Motif
Other DBs
NCBI-GeneID:
103467939
NCBI-ProteinID:
XP_081465223
LinkDB
All DBs
Position
7:complement(21708632..21720843)
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AA seq
651 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVQKMGKKESGIVN
PKDRFLWEKCQFSQLRSANRFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDEKLK
EVFSAFGRTLSVRVMKDEKGQSRGFGFVNYAHHDDAQKAVDEMNGKELNGKTIYVGRAQK
RLERQGELKRKFDQMKQDRIQRYQGVNLYVKNLDDGINDERLRKEFSPYGTITSAKVMTE
GGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQRLAT
LRTMSNPIIDSFPQSGYYMTVPQPPTRSFYNHSAVSNLRPVPRWMGQPPRAQGPYSAQYI
GSPLPRRGSPTITTVRQASTQAPRIITSSQKTNNIGTQTGGVPRGNQYKYSSGVRNPLHV
VTVPVPMTRQQVASAPVAEPAVHIPGPEPLTASMLAAAPLMDQKQLLGERLYPLIHALHP
NLAGKITGMLLEIDNSELLHMLESPESLNSKVEEAIAVLQAHKAKECSPKK
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggtccagcgtatcctctggcctctttgtatgtcggggacctgcacccc
gatgttacagaagccatgctgtatcagaaattttctcctgctggacccatcatgtcgatc
cgcgtgtgccgggacatcatcacccgcagatccctaggatacgcctacataaacttccag
cagccagcagacgcggagtgtgccttagatacgatgaactatgacgtcattaagggtcga
cccattcggataatgtggtctcagcgtgatccaggtctcaggaagtccggtgtgggaaac
atctttatcaagaacatggatgagtccattgacaacaaggcactgtatgataccttctct
gcctttggcaatattttatcctgcaaggttgtctgtgatgagaagggatcaaaaggctat
ggctttgttcactttgagactcaagaggctgcaaatcgggccattgaaacaatgaatggg
atgcttctgaatgacaggaaagttcaaaagatgggtaaaaaggaatctggtattgtcaac
ccaaaggaccgtttcctgtgggaaaaatgtcagttctcccagcttaggtcagcaaatagg
tttgttggccacttcaagtctcgcaaggaaagggaagttgagtttggctccaaagctatg
aagtttaccaatgtctacatcaagaactttggagaggacttcactgacgagaaactgaag
gaggttttttctgcatttgggaggaccctcagtgtgcgagtgatgaaggacgagaaggga
caatcaagagggtttgggtttgtcaactatgctcaccatgatgatgctcagaaggctgtg
gatgaaatgaatggaaaggagcttaatgggaagaccatctacgtaggtcgtgctcagaag
cgtttggagcgccagggggagctgaagcgcaagtttgaccagatgaaacaggatcgcatc
caacgctatcagggggtgaatctgtatgtgaagaacttggatgatggcataaatgatgaa
agactccggaaggaattttctccttatggtacaatcacaagtgcaaaggtgatgactgaa
ggtggccaaagcaagggctttggcttcgtctgcttctcgtctccagaggaagcaaccaaa
gcagtgactgaaatgaacgggagaattgttgcgaccaagccgctgtatgttgcgctggcg
cagaggagggaggagcgtaaagctattctaactaacaagtacatgcagagactggctacc
ctgaggaccatgagcaaccccatcatcgactcgttcccccagtcgggatactacatgact
gtaccacaacctcccactcgctctttctacaaccacagtgctgtcagcaacctgagacca
gtccctcgttggatggggcagccgcccagagcccagggaccttactcagcccagtatata
gggagtcctcttcctcggcgtggttcaccaaccatcactacagtccgacaggcttccact
caggctccacgcatcataacctcctcacaaaagacgaataacatagggactcagactgga
ggagtgcccagaggaaatcagtacaagtattcgtctggagtgaggaaccctctgcatgtc
gttacggttcctgttcccatgacgagacaacaggttgcttctgcgcctgtggctgaacca
gcagttcacattccaggcccggagcccctcaccgcttcaatgctggctgcagctccactt
atggatcagaaacaactccttggggaacgactgtatccactaattcacgcccttcaccca
aacctggcaggaaaaatcacagggatgctgctagagattgacaattcagagctgctgcac
atgctggagtcaccggagtccctgaactctaaggtggaagaggcaatcgctgtcttgcag
gctcacaaggcaaaagagtgttctccaaaaaagtga
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