Poecilia reticulata (guppy): 103468751
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Entry
103468751 CDS
T05149
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103468751 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103468751 (xab2)
03041 Spliceosome [BR:
pret03041
]
103468751 (xab2)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103468751 (xab2)
Spliceosome [BR:
pret03041
]
Complex B
Other components
Prp19-related factors
103468751 (xab2)
Complex C
103468751 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
SNAP
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
103468751
NCBI-ProteinID:
XP_008414255
UniProt:
A0A3P9NGN8
LinkDB
All DBs
Position
LG8:14308248..14316314
Genome browser
AA seq
846 aa
AA seq
DB search
MPSLNGKSDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPAYEEVNNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPMYLRFVHSLPLPETALRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTISDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKEKILFVRSDASRSELAELSKQANPDEINIDDEDEDDDDQGPDEVQLEQKSVPTAVF
GGLKED
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgccttccctaaatggaaaatctgacgttatatttgaggatgatgatcttccttatgaa
gaggagattatcaggaatccatactcagtcaagtgttggatgcgctacattgaattcaaa
cagaatggagccaaatccaccctgaacatgatatatgaacgggctctgaaggaattgcct
ggaagctataaattgtggtacaattatctcagagaaaggaggaaacaagtaaaaggaaaa
tgcattacagatccagcatatgaagaggtcaataactgccacgaaagagcacttgtgttt
atgcacaagatgcccaggatatggattgattactgtcagttcgtcgtgtcacagtgtaaa
atcacgagaagtcggagaacgtttgaccgggctctaagagcactacctgtaacccagcac
ccacgaatctggcctatgtacctgcggttcgttcacagcttgcccctgcctgaaacagcc
ctgcgggtatatcgaaggtaccttaagctatctccagagaacgcagaagagtacatagac
tacttgcggtctgttggtcgcttggatgaagcagctgtgcgattagcagcaattgtaaac
gatgaaagctttgtgtccaaagagggcaagtcaaactatcagctgtggcacgagctgtgc
gacctgatctctcagaatcccgataaagtgacctctttaaatgttggagccatcatacga
ggcggcctcacacgctttacagaccaacttggaaaactttggtgctctttggctgattat
tacatcaggagtggccactttgagaaagcacgggatgtttatgaagaagccatacttact
gtagtaactgtgagggatttcactcaagtgtttgatagttatgctcagtttgaggagagc
atgattgctgcaaagatggagaccactgctgagatgggacaagaggaggaagatgacata
gacctggagcttcgcctggcccgctttgagcagctaattgcccggcggccacttctgctc
aacagtgtactgctgaggcagaatccccataatgtgcatgagtggcacaagcgagtaaaa
ctttatgaaggaaatccacgacagatcatcaacacatacactgaggcagtacagacagtg
gatccaatgaaggccactggaaaacctcattctctctgggtttcttttgctaaattctat
gaggaaaatgaacagctggatgacgccaggacaatctttgagaaggctactaaagtaaac
tacaaacaagtggatgaccttgctgcagtttggtgtgaatatggagagatggaacttcgc
catgagaattatgatcaggcactacgcatactgaggaaagccacagcaatcccatctaag
aaagcagaatactttgattcatctgagccagtccagaacagagtctacaagtccctgaag
gtctggtctatgctggcagaccttgaggagagtctcgggacttttcagtctacaaaagca
gtgtatgaccgcattattgatctacgcattgccactcctcaaattgtcatcaactatgcc
atgttccttgaggagcacaactactttgaggaaagctttaaagcatatgaacgagggatc
gctctcttcaagtggccaaacgtttatgacatctggaacacttaccttaccaagttcatt
gaccgctatggcggcaaaaaattggagcgagccagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaagaccatttatctgttgtatgccaaactggaagaggag
tatggattggcacggcatgccatggctgtctatgaaagagcaacgcaggcagtggaaact
gaagagagacaccatatgtttaacatctacatcaagagagcagctgaaatttatggtgtt
acgtacaccagagctatttaccagaaggctattgaggttcttcctgatgagcatgcgagg
gatatgtgtatgcgatttgctgacatggagtgcaaacttggggagattgaccgtgccaga
gcaatctactcctattgctctcagatctgtgacccaagggtgacagcaaatttctggcag
acctggaaggaatttgagattcgccatggaaatgaggatacaattcgggagatgttgaga
atcaagcgcagtgtccaggctacatacaacacccaggtcaactttatgtcctcgcaaatg
ctgaaggcttcaacaagctctacaggcactatttcagatcttgctcctggccagatggga
attgatgatatgaaaatgttggagcagaaagctcagcaacttgctgcagaggctgagcag
gacaaacccaaggagaaaattctgtttgtcaggagtgatgcttctcgcagtgagttggct
gagctttccaaacaagccaatcctgatgagataaatattgatgacgaggatgaagatgat
gatgaccaaggacccgatgaggtgcagcttgagcagaagagtgttccaacagccgtcttc
ggaggtcttaaagaggactga
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