Poecilia reticulata (guppy): 103471012
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Entry
103471012 CDS
T05149
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103471012 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pret03021
]
103471012 (polr1a)
Enzymes [BR:
pret01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103471012 (polr1a)
Transcription machinery [BR:
pret03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
103471012 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
CheX
GAGA_bind
BUD22
Motif
Other DBs
NCBI-GeneID:
103471012
NCBI-ProteinID:
XP_008417993
UniProt:
A0A3P9N1E2
LinkDB
All DBs
Position
LG10:complement(6487771..6516902)
Genome browser
AA seq
1695 aa
AA seq
DB search
MLFSKEVPWRRLEGMSFGLYSPEEIRKLSVKTITNSKFLDAVGNVAQNSLYDLALGPTDI
KEICSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAIHLL
VNQLRILERGAMEEVHLVERVLNQHLEENPKATGDEIEQVLREFTNMVIGVNAEASQNSK
PIKHLVEKKSSLINDFWRVQLNTRKCPYCRVGRSTVRREHNTKLIVTMPTGGQTDENAED
LLTGKRVFLTASTAREHISKLWEKEGFFLKFLFPGLEESSGSEGQKSFYPDLFFLELLVV
PPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIAGEKQTEEVEEVTLDPEDQ
TFLSGISGVTLPDKLYNMWIRLQSHVNIVFDSDMDKLMTDKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRKTILSPSSAAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQTELGRAEAYTLVS
TNQQYLVPKDGKPLAGLIQDHMVSGTKMTIRGCFFTKDQYTELVYRGLTDKTGRIRLLAP
ALLKPQQLWTGKQVVSTLLLNILPDKAVPLNLTGKAKIPGKAWIQLPPRSSPGYNPDSMC
ESQVVIRQGELLVGVLDKAHYGSSPYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANMRRKQIIQESLKIGTTALQAAFKLPPSMTPAEATSRWQDAHLSP
DQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTPFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIQHNYEVIRRSQDLDSVLARLDPHTAARHFTAIQRWKAKRELACPRRGAFLLFS
QKKLAKLREAMPSTDPLPGQDPAVLQLVKDWHSLDEAGRAKYTRRSSRCPEPTLGLFRPD
VCFGSVSENFHDITEKYIQNRGNATQDDMETQRLRQLLYYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKRA
KTLRKQLSRVCLAEVLQKVDVVETLRIETYQRLQLFKVTFHFLPPERYRDDNLLTPHQIL
HYMETRFFSLLLEAIKKRTAKLASISVETRKATPGDKNMDEDGTAGTQDGGGEEEEEEGG
EVVDDQGDEGDADASDAKRKSKQTEEVDYESEDEGEGGDAEEDEGEEENSQANSVEETQP
ESADSGEQQQQQQQQKKKKKKETKVEQGGESSVQMRVNSVLSSNSAIQRYSFDQQEELWC
EVELEFPMNRIHFDLTSVLSTLAQNAVIMETRGLTRCLLSETTTKSGGKQTVLNTEGINM
HEIFKYNDILDVNKLYSNEVHAMASTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVA
DYMCFEGVYKPLNRHAIMSNSSPLQQMTFETSFKFLKQATMLGSRDQLVSPSACLVVGKV
VKGGTGLFELKQPLQ
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccaaagaagtgccatggcggcggctggagggcatgtcgtttggcttgtac
tcacccgaagaaataaggaagttgagcgtgaaaaccatcaccaactccaagtttctggac
gctgttggaaatgtggcccagaacagtttgtatgacctggctctggggccaacagacatc
aaagagatttgttccacctgctgtcaggatttcaacaattgtccaggacactttggacac
atagagctgcctctaccagtctacaacccactgttctttgataaactctacctgttgatc
cgtggctcgtgtctgtcgtgtcacatgttgacgtgtccccgcgccgccatccacctgctg
gtcaaccagctccggatactggagcgtggagccatggaggaggtccaccttgtggagaga
gttcttaatcagcaccttgaagagaaccccaaagccacaggagatgagatcgagcaggtg
ctgagggagttcaccaacatggtcattggagtgaacgccgaggcttcacagaactccaaa
cccattaaacacctggttgagaagaagagcagcctgataaatgacttctggagggtccag
ctgaacaccaggaagtgtccgtactgcagagttggcaggtcaacggtgcgtcgcgaacac
aacaccaagctgatcgtcaccatgccaacgggaggacaaactgatgaaaacgcagaagat
cttctgactggaaagagagtgttcctcactgccagcaccgccagggagcacatcagtaaa
ctctgggagaaagaaggtttcttcctgaagttcctgtttcctggtctggaggagagctca
gggtctgagggacagaagagtttctacccggacctgttcttcctggagctgttggtggtt
ccaccctgcaggtatcgccccatcaatcgcctaggcgaccagatgttcaccaacggccag
acggtcaacatgcaggctgtgatgaaggactgcggcatcatcaggaaacttctggctctc
atagcaggagagaagcaaactgaggaggtggaggaagtgacgttggacccagaggatcag
acgttcctgtcaggaattagcggagtgacgttaccagataagctctataacatgtggatc
cgcctgcagagccacgtcaacatcgttttcgacagtgacatggacaaactgatgacggac
aaatatcctgggatcagacagatcctggagaagaaggatggattgttccggaagcacatg
atggggaagcgggtggactacgccgcccggtccgtcatctgccccgacatgtacatcgga
accaacgagatcgggatccccatggtgtttgccaccaagctgacctaccctcagcccgtc
acgccctggaacgtgaaggagctccggcaggccgtcctcaacgggcccaatgtccaccct
ggcgcctccatggtgattaatgaggatggcaggaagaccatcctgtcgcccagcagcgcc
gcgcagagggaggcggtcgccaagcaactgctgacgccctgtcccggtccacacaagatg
cccatgaagatcgtgaatcgacacataaagaacggagacgttctgctgctcaacagacag
cccaccctgcacagaccctccattcaggcccactgcgctcgcatcttacctggagagaag
gtcctgcggcttcactacgctaactgcaaggcgtacaacgccgactttgatggagacgag
atgaatgcccacttccctcagaccgagctgggccgagctgaggcctacacgctggtcagc
accaaccagcagtacctcgtccccaaggacggtaaacctttagcgggcctcatccaggac
cacatggtgtcaggaaccaagatgaccatcagaggctgcttcttcactaaggaccagtac
actgagctggtgtaccgagggctgactgacaagacgggccggatcaggctgctggccccg
gccctcctcaaacctcagcaactgtggaccgggaagcaggtcgtctccactttactgctg
aacatcctcccagacaaagccgtcccccttaacctcaccggcaaagccaaaatccccggc
aaggcttggatccagctcccgcctcgatcttctccggggtacaacccggatagcatgtgt
gagtcacaggtggtgatccgtcagggcgagctgctggtcggcgttctggacaaagcgcac
tacggctcgtcgccctatggtttggtccactgctgctatgaactgtacggaggggagacc
agcgggaagctgctcagctgcctggctcgactcttcaccgcctacctgcagctctacagg
ggcttcactctgggcgtggaagacattctggtgaaacctggagccaatatgcggaggaaa
caaatcatccaagagtctctgaaaatcggcaccacggccttgcaggctgccttcaaactg
cctcccagtatgactccggctgaagccaccagtcggtggcaggacgctcacctcagccct
gaccaaagagacttcagcatggccgatcacaaattcaaggaagtggccaaccaagtgaac
aacgacatcaacaaggtgtgtatgccggtcggactgcacaccccgttcccagacaacaac
ctccagctcatggtgcagtctggagctaaaggctccaccgtcaacaccatgcagatctcc
tgcctgctgggtcagatcgagctggagggccgcaggccgcccctgatgccttcaggaaag
tttctgccttgcttccagccgtacgacccttcaccaggagcggggggcttcgtttctgga
cgcttcctcacaggaatcaagccacaggagtttttcttccattgcatggctggcagagaa
ggacttgtggacacggctgtgaaaacgtcccgatcaggatatctgcagagatgcatcata
aagcacctggagggtctggtggtgcagtacgacctgaccgtcagagacagcgatggctcc
gtggtccagttcctgtacggcgaggatgggctggacatccccaagactcagttcctccag
ccgaggcagtttccgttcatccagcacaactatgaggtcatcaggaggtcacaggacctg
gacagcgttctggcccgtttggaccctcacactgctgcccgccacttcacagccatccag
cgctggaaagcaaagagggagctggcgtgtccccgcagaggagcctttctactgttttcc
cagaagaagttagcgaaactacgagaggccatgccgtcaaccgatccgctgcccggtcaa
gaccctgcagtgctgcagttggtgaaggactggcactctttggacgaagccggcagagcc
aaatacaccaggcggtcgtcccgctgccccgagccgaccctgggcctgttcaggcccgac
gtctgcttcgggtcggtatcggaaaacttccatgacatcaccgagaagtacattcagaac
agaggcaacgccacacaagatgacatggagacgcagaggctgcggcagctgctctactat
aagtggcagcgctccctgtgtgacccaggggaagctgtgggcctgctggcagctcagtcc
ataggcgagccctccacccagatgaccctcaacaccttccacttcgcaggcagaggagag
atgaacgtcactctgggaatcccccgactgagggagatcctgatggtggccagttccaac
attaaaacccccatgatgagcgtcccggtgctgaacaacaagaaggccttgaagagggcc
aagacgctgcggaagcagctcagcagagtctgcctggctgaggtgctgcagaaggtggat
gttgtcgagacgcttcggatcgaaacttatcaaagactgcaattgtttaaagtcaccttt
cacttcctgcctcccgagcgttaccgtgacgacaatcttttaactccccatcagatcctc
cactacatggagacgaggtttttcagtctcctcctggaagccattaaaaagcgcacagcc
aagctggcctctatttccgtggagacgaggaaggccacccctggagataaaaacatggac
gaggacgggaccgcggggacccaggacggcggtggagaagaggaggaggaggagggagga
gaagtggttgatgaccagggggatgaaggagacgccgacgcatcagacgccaagaggaaa
agcaaacagacggaggaggtagactatgaaagcgaagacgagggcgaaggcggcgatgcc
gaagaggatgagggcgaagaggagaacagccaggcaaactctgtggaggagacccagcct
gagtcagcagacagtggagagcagcagcagcagcagcagcagcagaagaagaagaaaaag
aaggaaacgaaagtggagcaagggggagagtcctcggtccagatgagggtgaactcagtt
ctgtcgtctaactcggccatacagagatactcctttgatcagcaggaagaactctggtgt
gaggtagagctggaattccctatgaacaggatccacttcgacctgacctcggtcctgtcg
actctggcccagaacgccgtcatcatggagacccggggcctgacacggtgcctgctgagc
gagaccacaaccaagtctgggggaaaacagacggttctcaacacagagggcatcaacatg
cacgaaatctttaagtacaacgatatcctggacgtcaacaaactgtactccaatgaggtc
cacgccatggccagcacctacgggatcgaggtggctctgaaagtcatagagaaggagatc
aaagacgtctttgcagtttatgggattgaggttgaccccaggcatctgtcattggtggca
gactacatgtgcttcgaaggcgtctacaagccgttaaaccgacacgccatcatgtcgaac
tcgtcccctctgcagcagatgaccttcgagaccagcttcaagttcctcaaacaggccacc
atgctggggtcacgtgatcagctggtttctccctccgcctgcttggttgtggggaaggtg
gtcaaaggtggaacagggctatttgaactgaagcagcctctgcagtag
DBGET
integrated database retrieval system
