Poecilia reticulata (guppy): 103471546
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Entry
103471546 CDS
T05149
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03013
Nucleocytoplasmic transport
pret03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103471546 (upf3b)
03015 mRNA surveillance pathway
103471546 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103471546 (upf3b)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103471546 (upf3b)
mRNA cycle factors
P-body specific factors
103471546 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
103471546
NCBI-ProteinID:
XP_008418842
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Position
LG10:16734709..16741424
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AA seq
453 aa
AA seq
DB search
MKEDKENTRPKEKRVEIKCEDGEKTEKCKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EVDYMEFFSNDTSLFPHLFARAYISFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTAKKRNKKKDSKCGTIAEDPDYKRFLEYYNGDEEKLTSTPETLLEEIEARSKELEAK
RTTPLLDFLKNKQRLREEKKEERKRRELERKRLRDEERRKWREEERRKRKEAEKMKRLEK
PSENKDKDHTKEEPKIKLLKKPDKSDDGDSEKPKEKFKKPEKPHREDRASGGADHRRRPN
FDSKEERERKGNEDGRKEFRERDLDREKERERRLREKERIRRQDEERRRRREQQDGENTS
RKREEEIRKEKAMEKRRSENSADAEKTEKPARENRKEESSKRERVRNKDRPAIQLYQPGT
RSRNRTTGGGADSGSADRKPDADNKKAADRGED
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaagaaaacactcgaccgaaagagaaaagagtggaaataaaatgtgaa
gatggagagaagacggagaagtgtaaggagaagaaggaggccatgacaaagattgtgatc
agaagattacctccgagtttgactaaagaggagctggaggagcagctgcaacctcttcca
gaagtggactacatggagtttttctccaacgacaccagccttttcccacatctcttcgca
agggcttacatcagtttcaaaaatcaggaggacatcgttctcttcagggatcgatttgat
ggatatgtgttcatagataacagaggacaggagtatcctgccattgtggagttcgcacct
ttccagaaaaccgccaagaaaagaaataagaagaaggactcaaaatgtggaacaattgct
gaagatcccgactataaaaggtttcttgaatattacaatggagatgaagagaagctgacg
tccacacccgagactctgctggaggagatcgaggcaagatcgaaggaacttgaagccaaa
agaacaactcctcttctggacttcctgaagaataagcagagactgagggaggagaagaag
gaggagagaaagaggagagagcttgagcggaagcgtctgcgtgacgaagagcgccgcaaa
tggagggaggaggagcggaggaagaggaaggaggcggagaagatgaagagactggagaaa
ccttcggagaacaaagacaaggaccatactaaagaggaaccaaaaattaagctcttgaag
aagccagacaaaagtgatgacggcgattctgagaaacccaaagagaagttcaagaaacca
gagaagccgcacagagaggacagagcgtcaggcggcgctgaccacaggaggaggccaaac
tttgacagcaaggaggagcgagaaagaaaagggaacgaagacgggcggaaggagttcagg
gagcgcgacttggaccgtgagaaggagagggagcgacggctgagggagaaggagcgcatc
cgacggcaggacgaggagcggcggagacggcgggagcagcaggacggagagaacacgtcc
agaaaacgagaggaggagatcagaaaggagaaggcgatggagaagaggaggagcgagaac
tctgcagacgccgagaagacagagaaaccggccagagagaacaggaaggaggagagcagt
aaaagagagagagtccgtaataaggaccggcccgccattcagctgtaccagccggggacc
cggagccgcaaccgcaccaccggaggcggcgccgactccggctccgctgacaggaaaccc
gacgccgacaacaagaaggcggccgacagaggggaagactga
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