Poecilia reticulata (guppy): 103472009
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Entry
103472009 CDS
T05149
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
pret
Poecilia reticulata (guppy)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
103472009
NCBI-ProteinID:
XP_008419574
UniProt:
A0A3P9PLA1
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Position
LG11:3425637..3497995
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AA seq
1621 aa
AA seq
DB search
MEFRLGFRITLVCFVLALTLSGEGVDAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VANLVESFDVAPDKTRVAVVRYSDRPTQEFNLGRYRTLEDVKRAARNIRYLGGNTMTGDA
ISYTTTNIFTERNGARPAEHGIQKVAILLTDGRSQDYVLEPSKAAAKAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPKMKVQPDRFKPNSTSY
GLEEVPGFDLMEYFNVKDILGTRVDEGQSSYVRLGTMPIVQQTEDVFAQGLPDEYAFVTT
FKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIGLSVEAKSVALYLDCKHIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKQAELETCCDLPTGPCPKKVVTEAPPVQIPTPTPTSAEQQRGPQANCSCPP
GAKGDVGARGLPGLKGDKGDFGPKGAIGPPGIKGERGESGKLSSVKGDRGEKGDRGSIGL
TGSPGQKGEKGTGGVPGIDGLTGDKGDKGEAGRAGAAGLPGPAGQKGIQGDAGIPGAPGP
KGVSGNSGVKGEKGTPGAGGLPGVDGLPGKPGLPGKDGLRGLAGAPGPNGIKGNKGERGL
PGLPGDVVQQEGLRGERGEPGPPGPPGADGRPGPAGPAGPPGLPGEHGDPGQMGKKGENG
LPGVDGLPGPPGPLGPPGPPGGPGPMGQPGLPGELGFPGKPGEPGKPGMPGKDGLDGLAG
TDGSVGPRGERGTDGFPGKPGPKGDEGPPGPRGPPGERGEAGTPGQPGADGARGDRGTPG
ERGTEGPFGPKGEKGDKGDVGPRGLPGVPGNVANVIPEPGEPGKPGEKGEKGDQGKPGEL
GPRGLPGEQGFQGQPGPPGPKGDTGLTGEIGRVGDPGPPGAAGSQGPRGAPGSVGIPGII
GPPGPAGQRGDKGEQGKPGQLGSRGQPGEPGIIGPPGAPGKGKDGQNGEPGPPGNQGLPG
VKGPPGQRGPPGLPGDRGSPGEGKEGPLGPPGKNGEPGPVGLRGQPGVAGPQGPAGHNGL
PGRPGEKGSQGEPGKSADLSDLNLKDICSDCPAGPPGPPGLPGVPGDKGHQGPPGKDGQD
GYPGPPGPTGPQGSPGGDGVKGIKGDQGPPGGPGDKGEKGHPGPPGHPGPAGLMGAPGND
GQPGQVGPPGPPGEKGKEGLKGIQGPPGLPGLIGQPGKMGKDGRPGESGEPGKQGEPGPP
GNPGLRGLPGFKGHRGEPGPPGEKGEDGKPGSAGRDGKPGKEGPKGPPGPEGLLGPRGEP
GKPGEPGPSGKSGLPGTPGLRGDKGEPGNPGLPGFNGPKGPAGPPGPIGPEGKQGMPGRL
GDRGLRGDKGDHGTKGEKGQTGDPGMPGNPGPPGRKGHTGIMGMSGPPGELGAPGPQGPS
GNPGLPGPRGESVSLEQMRRLVQEELAKQLEAKMAYLMAQIQPAHVKSTAGRPGPPGPPG
KEGSPGRQGPPGESGIPGQNGGEGPRGPMGPKGDKGARGEKGETGVGERGEQGPVGPIGP
AGLPGYGKDGSPGQVGAQGEPGNPGPHGQPGPPGPPGQCDPSQCAYYASLAQRPHTKNVK
G
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggaattccgactgggatttaggatcaccctggtctgctttgtcctggccttgactctt
tcaggggaaggagtggatgcacaaagggcaggttgtaagaatgtccactacgacttggcg
tttattctggatacctcatccagtgtgggaaaggaaaattttgagaaaattaggcaatgg
gtagcgaacttggtagagtctttcgacgtagcgcccgacaagacgagagtggcagtggtt
cgctacagtgacaggccgacccaggagtttaacctggggcgatataggaccctggaagac
gtgaagcgagctgcccgtaacatacgctacctagggggaaacaccatgaccggggacgct
atcagctataccaccacgaacatcttcacggagcggaacggcgcgaggccagctgagcac
ggcattcagaaggtggccatcttgctaactgacggccgaagtcaggattacgttctggaa
ccttccaaggcagccgccaaagctggcatccgaatgttcgccgtgggcatcggggaggct
ctgaaggaagagctggaggaaatcgcggcagagcccaagaatgcccacgtctttcacgtg
accgacttcaacgccattgataaaatccgaggcaggctgaggaggaggctgtgcgaaaat
gtcctgtgtccaaagatgaaggttcaacctgatcgcttcaagcccaacagcaccagttat
ggtcttgaagaggttccagggtttgacctgatggagtacttcaacgtaaaagacatcctg
gggaccagagtcgatgaaggccagagttcatatgttcgcctcgggacgatgccaatagtc
cagcaaacggaggatgtgtttgctcaaggattgccagatgaatacgcctttgtgacaaca
ttcaaattcaggaaaacctcaagacgggaagactggtacctctggcagatttttgacaaa
tatggaatcccacaggtgtccatccgtctggacggggagaacaaagccgtggagtacaat
gcagttgggttgacgaaagacgctgtcagagctgtgttcaagaaccccgaagtcgacaac
ctcttcgaccgcaactggcacaagatcggcctcagtgtggaggcgaagtctgtcgccctg
tacctggactgcaaacacatccagactctgccaatcgaagaccgggaagacatagacatt
caggggaagacggtgattggcaagagactgtatgacagcgttcccatagactttgacctc
caaaggatgatgatttactgtgattccaaacaagcagaactggaaacctgctgtgatctc
cccaccgggccgtgccctaaaaaggtcgtgactgaggccccccctgtgcagatccccaca
ccgacacctactagtgcagagcagcaaagaggtcctcaggcaaactgctcctgccctcca
ggggccaagggagacgtcggagcacgcggtcttcctggtctaaagggtgacaagggtgac
tttggccctaaaggtgccatcgggccaccgggcatcaaaggggaaagaggagaatctggc
aaactatcctctgtcaaaggtgacagaggggagaagggtgatagaggctctatagggtta
acaggttctcctggacaaaagggagagaagggcaccggtggtgttcctggtattgatggt
ctaactggtgacaaaggcgacaaaggcgaagcaggcagggccggagctgcagggttaccg
ggtccagccggacagaagggaatccaaggagatgcaggaattccaggtgcgcccggaccg
aaaggcgtctctggaaattctggtgtgaaaggagaaaaaggaactccaggagctggtggt
cttccgggtgtagacggattgccaggaaaacccggactacctggaaaagatggtctgaga
ggactggctggagcacctggaccaaacgggatcaaaggcaacaagggggagagaggactt
cctggattacctggggatgtggtgcaacaagaaggcctacgaggtgaaaggggagagcct
ggacctcctgggcctcctggagcagacggtcgaccaggaccagctggtcctgctggtcca
ccgggtctgcctggtgagcacggcgatcctggccaaatgggaaagaaaggtgaaaatggc
ctgccgggagttgatggccttcctggacctccaggtcctcttggtccgccgggtccaccg
gggggaccaggaccaatgggacagcctggtctacctggtgaactaggatttccgggtaaa
ccaggagagccaggaaaacctggaatgcctgggaaggatggcctggatggtcttgctggt
actgatggctctgtggggcccagaggagaacggggaacagacggttttcctggaaagcct
ggacctaagggtgatgaagggcctcctggaccaagaggtcctccaggggagagaggagaa
gctgggacccccggtcaaccaggtgctgatggtgcacgaggagacagagggactccggga
gaaagaggaacagagggaccatttgggccaaaaggtgaaaagggtgacaagggtgacgtt
ggaccacggggactccctggagttccaggaaacgtcgctaatgtcatcccagagcctgga
gagccggggaagccgggagagaagggggagaaaggggaccaaggaaaaccaggagaattg
ggtccaagaggcttaccaggtgaacaaggtttccaaggacaaccaggaccacctggtcca
aaaggtgataccggactcacaggggagatcggccgtgtaggagaccctggtccccctggt
gcggcaggatctcagggaccacgtggtgcaccaggaagtgtgggtattccaggcatcatt
gggcctcctggtccagccggacagagaggagataagggagagcaaggtaaaccaggacaa
cttggttcccgaggccaaccaggagagcctggtatcattggacctcctggagcacctggc
aagggcaaagatggccaaaacggagagccgggaccaccagggaatcaaggactacctgga
gtcaagggcccacctggacaacgcggaccccctgggttacctggggacaggggctctcca
ggggaagggaaagagggtcctctggggcctccagggaaaaatggggaaccaggacctgtg
gggttgagaggccaaccaggagttgcaggtcctcaaggtccagcagggcacaatggttta
ccaggaaggccaggagaaaagggatctcaaggagagcctggaaaatcagcagatctatct
gacttaaatctgaaggatatttgctcagactgccccgcaggtccccccggaccgcccgga
ctaccaggagtcccaggtgataaaggacaccagggacctcctggaaaagatggccaagat
ggatatccggggccccctggaccaactggacctcaggggtctcctggaggtgatggtgtg
aagggcataaaaggggatcaaggacctcctggaggccctggagacaaaggagaaaagggc
catccaggaccccctggccatccaggtcctgcaggattaatgggtgctcctggtaacgac
ggccaacctggccaagttggacccccaggccctcctggagaaaagggaaaagagggactc
aaaggaatccaaggaccaccaggtcttcccggcttgataggtcagcctgggaaaatggga
aaagatggcagaccaggtgaatcaggagaacctgggaaacaaggtgaacctggacctcca
ggaaaccctggactccggggactccctggcttcaagggccacagaggagagcctgggcct
ccaggagaaaagggagaggatgggaaacccggatcggcaggacgtgacggcaaaccggga
aaggagggccccaaaggccctcctggccccgagggacttcttggaccaagaggagagccg
ggtaagccgggtgagccgggaccttctggaaaatcaggactccctggaacaccgggtctg
agaggagacaagggagaaccaggtaaccctgggctaccaggctttaacgggcccaaagga
cctgcgggtccacctggacccattggccctgaaggcaaacagggaatgccaggtcgactt
ggagatcgaggccttagaggagataagggagaccacggtacaaaaggagaaaaaggacag
actggagatcctggtatgcctggaaatcccggtcccccaggtagaaagggccacacaggg
ataatgggaatgtcaggaccaccaggtgaactcggagccccggggcctcagggaccttca
ggaaaccctggtctcccaggacccagaggcgagtcagtgtcactggagcagatgaggagg
cttgtccaggaggagctggccaaacaattagaagccaaaatggcttacctcatggctcag
atccagcctgcacatgtgaagagtacagcgggacgtcctggacctccaggtcctccaggt
aaagaaggcagccctggacgacaaggtccacctggagagtcaggtatacctggacaaaat
ggtggagaaggaccccggggacccatgggtcctaagggtgataaaggagcaagaggagag
aaaggagaaactggtgttggtgagagaggggagcagggccctgtcggccccataggtcca
gccggtctaccgggatacggcaaagacggaagccctggtcaggttggagcccagggagag
ccaggaaaccccgggccacacggtcaacctggacctcctgggccccccggccaatgcgac
cccagccaatgcgcctactacgccagcctggcccagaggccccacaccaaaaacgtaaag
gggtaa
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