Poecilia reticulata (guppy): 103472273
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Entry
103472273 CDS
T05149
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103472273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pret03021
]
103472273
03036 Chromosome and associated proteins [BR:
pret03036
]
103472273
Transcription machinery [BR:
pret03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103472273
Chromosome and associated proteins [BR:
pret03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103472273
PBAF complex
103472273
GBAF(ncBAF) complex
103472273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
103472273
NCBI-ProteinID:
XP_008419996
LinkDB
All DBs
Position
LG11:11966935..11974805
Genome browser
AA seq
937 aa
AA seq
DB search
MSGGTNLGFPGTNQALAHRKKDSSPSARFWESPDTLTQLEVVRQWIGKHYKKYVLVDAPS
CQVLAAVTLQLLQFQEEAFGRQAPNPALTKLPAHCFLDLQPGGGLGHILGTAYKFKVEQG
WRRFDLQNPSRTERNVEMFGVIEKALIQNNCVSIPVVFIDPTVDLELSSRLTGIIIKHKG
AITEDSIMATHHVYGSLASTEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSSSDVEGDV
EDVPHVERPWRVHAGWVLDTDVFNEWMNEEDYCVNERNLPLILRQRIHLQEDQDSKSTPL
KKRRRSPSPSTDGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEVVTLPKNVNLKK
DSENTPVKGGIMADLDDQEDDFPGREEDEGRSEIPRLSEGEDNITEQTHHIIIPSYTSWF
NYNSIHSIEKRALPEFFSGKNKSKTPEIFLAYRNFMIDTYRLNPQDYLSSTSCRRNLTGD
VCALIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPTGLAPLQHKPLQVSA
SQHMLNFPEKSREKPSDYQNFGLRTDIYARKHPKTKGANAGREWTEQETLLLLEALEVYR
DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSENPVMSTV
AFLASVVDPRVASAAAKAALEEFSRAQEDLLYKTSDPSNQPEQTDPMEAERLDSSSIQVP
VRLDGVKMEPGVPKLDGDQVKIEHSESILTEEGDVRGEDGENRGEGDDGRRGMELDLVEG
SVPTAAAAALSSAASKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDRE
KEALEQQRQQLLTERQTFHTEQLQQAEMKVRQQREQQGQPGYTMQHSGQSAANRMVPGGN
GQTMAPRHPGAPNGMYPSSQPDGIASAQPTPPSSSHS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggaacaaacctcggctttccggggacaaaccaagcgttggcgcatcgcaaa
aaagacagcagtccctctgctcggttctgggagagtccggacactttaacccagctggag
gtggtgcgacagtggatcgggaagcactacaaaaagtatgtgctggtggacgctccatct
tgtcaggtcctggctgcagtcaccttgcagcttctccagttccaggaggaagcctttggc
agacaagctcccaaccctgctcttacaaagcttccagcacattgtttcctggacttgcaa
ccaggcggcggactcggtcacatcctaggcactgcttacaaattcaaggttgaacagggc
tggagaaggtttgacctgcagaatccgtcgagaactgagagaaacgttgagatgtttggt
gtgattgaaaaagctttaatccagaacaactgtgtctccatccctgtggtatttattgac
cctactgttgacctggagctgtccagcagactcactggcatcatcatcaaacacaagggt
gcaattaccgaggacagtataatggccactcatcacgtatacggctcacttgcttccaca
gaggaggacgagtggatgcgtcctgttatgcgaaaggacaaacacgttttggtccactgg
ggcatgcaccctgacagttatgacagctggctgtcctcaagtgatgtggaaggagacgtc
gaagacgtgccgcatgtagagaggccgtggagggttcatgctggttgggttctggacaca
gacgtgtttaatgagtggatgaatgaggaggactattgtgtaaatgagaggaatctgccg
ctcatccttcgacagcgaatccacctacaagaagatcaggactccaagtccactccgttg
aaaaagagaagacgctcgccctcaccttccactgatggcagaaaaaaagggaagaaaggg
agaaggcgcggccaacaggaagaggagccagaagaagacctgaccaaagacatggaggac
ccaacacctgtgccaaacatggaagtagtcactctacccaagaatgtgaacctaaagaaa
gatagtgagaatacgccagtgaagggaggcatcatggctgacctcgatgatcaagaagat
gactttccaggaagggaagaagatgagggaagaagtgagatcccccgcttatcagaggga
gaggacaatatcactgaacaaactcatcatatcataataccaagctacacatcgtggttc
aattacaacagcattcactcgatagagaaacgtgctcttcctgaattcttcagcggaaag
aacaaatcaaaaactcctgaaatcttcctggcgtatcgcaacttcatgatcgacacgtac
cggctcaacccccaggactacctcagctcaacgtcctgcaggcgcaacctcactggagac
gtctgtgcccttataagggttcatgcctttttagaacagtggggtttgatcaactaccaa
gtggatgcagagagccggcccctccccatgggacctcctccaacccctcatttcaacgtc
ctggccgacacgccgaccgggctggctcccttgcagcacaaaccccttcaggtgtctgcc
tcgcagcacatgttgaatttcccagagaagagcagagagaaaccttcagactaccagaac
tttggtctgcgcaccgacatctatgccaggaaacacccaaagactaaaggagcaaacgca
ggacgagaatggacagagcaggagacactgttactgttggaggccttagaagtgtacagg
gacgactggaacaaagtatcggagcacgtaggctccagaacgcaggacgaatgcatccta
cactttctacgtttgcccatcgaggacccttacctggaggactcgtcggcctctctgggg
ccgctggcgtatcagcccgtgccttttagccagtcggaaaaccccgtcatgagcaccgtg
gccttcctggcgtctgtggtagatccgcgtgtggcgtcggccgcagcgaaggcggcgctg
gaggagttttccagagcacaggaagacttgctgtataaaacctctgatccatccaaccag
ccagaacaaacggatccaatggaagcggaaagacttgactccagctccattcaggttcct
gtgaggctggacggagtcaagatggagcctggcgtgccaaaattggacggagatcaagtt
aaaatagaacatagtgaaagtattctgacggaggagggcgatgtcaggggggaggatggt
gagaacaggggagaaggggacgatgggaggagagggatggagctggacctggtggaggga
agcgttcccacggcagcggcagcagctctgtcatctgctgcctcaaaggccaagcactta
gcagcagtagaagagaggaagatcaagtctctggtggctctactggtggagacgcagatg
aagaagctggagatcaaactgagacattttgaagagctggaaaccatcatggacagagaa
aaggaggctctggagcagcagcgccaacagctgctgacagagaggcagactttccatact
gagcagctgcaacaggcagagatgaaggttcgccagcagagggagcagcagggccagccg
ggttacacaatgcaacattcaggccagtctgcggccaacaggatggtacctggaggaaac
ggtcagacgatggcccctcgacaccccggagctccaaatgggatgtacccgtcgtcacag
cctgatgggatagcgtccgctcagcccactcctccgtcatccagtcacagctga
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