Poecilia reticulata (guppy): 103472277
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Entry
103472277 CDS
T05149
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103472277 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103472277 (patl1)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103472277 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
103472277 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
103472277
NCBI-ProteinID:
XP_081467923
LinkDB
All DBs
Position
1:33800934..33814729
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AA seq
797 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEDEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGRGLGGGDSSPGPAPAAAGRLPPLGFSSGPPGQDERSGGGDLAESLARFILDADPAIA
GVGAAERPGPAPGSAGPVLSAPRGPDQPRVLQQPASIPHKHQLPPGPPASGLAAASVLSY
QQQQHLLRRGAAPMGQMNSHSIWDNSMGFGPVSITPGLITHMEDSPLMSIIKEVGLPKRP
PQGRSDEGHDLSERAPPPRSSSPVIGSPPVRAVPIGTPPKHALSLNHQIHHPTAVHVRAP
VQHRFPAPFPERLSPNTLLNLANSPLCRGPFPPRVGPVLSQLQRAQLLNSQVAGFPRGGP
GPPLLAGGGFRPFFGGPPPPHGHRMGPPPPHGLPNHTPPIRHNTTHLHPQHRRMLTQRMQ
SRGGDRVRTGLDRRSRDPYSNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEK
RQEKERDSSSSRKEHATKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVT
TRSDDEEKREKQVWNKRRQVLYTVEKMYSLLLEVQDFEKRFVQTPEEDRDALMEQHKSNT
EQLSNSLQDGDWEDRVSDEQCVMIMSVRKGKRLVARLLPFLPAAQAAAVVMVIARNLPAL
AKKDKQDQALCCLVEPVSAVIQSLSSSALTDLLQELQGGEGQLAAALQNKFGVTLLFLIL
SEGERMQSSDPNCQLMDDNRWTELVFSVTRELLGVPSSSLAPPLFTPPNLLSLFSRYVDR
QRLELLQDKLQISASSR
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgtacgctggaggaagaggacgatgggctg
atcgaggacgaagacgagatcgaccagttcaatgacgacacgtttggagccggcgccatc
gatgacgactggcaggaggagcacaagcgcctggcggagctggatgagcgggacgggctg
ggcgccgggcggggcctggggggcggagactcctccccaggccccgcccccgccgccgcg
ggtcggctgcctccgctcggcttctcctctgggccgccgggtcaagacgagcggtcggga
ggcggcgacctggccgagtctctggcccgcttcattctggacgccgacccggccatcgcc
ggcgtcggagcggcagagaggcccggtccggctcccgggtcggccgggccggttctgtcc
gcgccgcggggcccggaccagcccagagtcctgcagcagcccgcctccatcccccacaaa
caccagctgccccccggaccccccgcctcaggcctggccgccgcctccgtgctcagctac
cagcagcagcagcacctcctgcgcagaggagccgctcccatgggccagatgaactctcac
agcatctgggacaacagcatgggcttcgggccggtcagcatcacgccgggactcatcaca
cacatggaggacagtccactcatgtccatcatcaaggaggtggggcttccgaagcgcccg
cctcaggggaggagcgacgaaggtcacgacctgtcggagagggccccgcccccccgctcc
tcctctcctgtgattggctctcctccggtgagggcggtgcctatcgggacgccgcccaaa
cacgcgctgagcctgaaccatcagatccaccaccccacggcggtccatgtcagagccccg
gtccagcaccggttccccgctccgttccctgagcgcctgtcccccaacacgctgctcaac
ttagccaactctccgctgtgccgcggtccgttccctcccagagtcggcccggttctgtct
cagctccaacgggctcagctgctcaactcccaggtggcgggttttcctcgcggcggcccc
ggcccccccctgctggccggcggcgggttcaggcccttcttcgggggcccccctcctcct
cacggccacaggatgggccccccgccgccccacggcctccccaaccacacgccgcccatc
aggcacaacacgacgcacctccaccctcagcaccgccgcatgctgacgcagcgcatgcag
agccgcggcggcgaccgggtcagaactgggctggaccgccgcagccgggacccgtacagc
aacctgatgagccagaaggagaaggagtgggtgaccaagatccagatgatgcagctgcag
agcaccgacccgtacctggacgactactactaccagaactactatgagaagatggagaag
cgtcaggagaaggagcgagacagcagcagcagcaggaaggagcacgccaccaagctcatc
acgccgcaggtggccaaggtggagcacacctaccggccagttcagtttgcaggatctctg
gggaagctgacggtgtccagcgtcaacaacccgaggaagatgatcgacgccgtggtaacg
acccgctccgacgacgaggagaagagggagaagcaggtgtggaacaagaggcgccaggtg
ctgtacaccgtggagaagatgtacagtttgctgctggaggtccaggactttgagaaacgc
ttcgtccaaacgccagaggaggacagagacgccctgatggagcaacacaagagcaacacg
gagcaactgagcaactcgctgcaggacggggactgggaggacagggtgagcgatgagcag
tgtgtgatgatcatgtcggtgaggaaagggaagcgtctcgtcgccaggctcctccccttc
ctgcctgcggcgcaggctgctgccgttgtcatggtgatcgctcgcaacctccccgccttg
gcgaagaaggacaagcaggaccaggcgctgtgctgcctggtggagccggtctctgcagtc
atccagtccctgtccagctccgccctcactgacctgctgcaggagctgcagggcggcgag
ggccagctggccgccgcgctgcagaacaagttcggcgtgacgctgctgtttctgatcctg
agtgaaggcgagcgcatgcagagctccgacccaaactgtcagctcatggacgacaatcga
tggaccgagttggtgttctcggtgaccagggagctgctcggcgtcccgtcttcatcgctg
gctccgcccctcttcacgcctcccaacctgctgtctctgttctcgcgctacgtggatcga
cagaggctggagctgctgcaggacaagctacagatctctgcttcatccaggtag
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