Poecilia reticulata (guppy): 103472896
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Entry
103472896 CDS
T05149
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103472896 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103472896 (skiv2l)
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103472896 (skiv2l)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103472896 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
103472896 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
103472896
NCBI-ProteinID:
XP_008420984
LinkDB
All DBs
Position
LG11:complement(24920781..24948793)
Genome browser
AA seq
1246 aa
AA seq
DB search
MDRIHVPPVGPMDLPLSLLEMGRSGRFELITHPLPDQPLPPQSTLPHGLPPTSLGLEREV
EKRFLQDPSWLPIHDTDFAFQKFLKVTERKVDVDSLLSCGPSPLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIKTRSEQE
EEIDFEKDLLKIPPGLKAGMDFSDTDAKLAKPEVNLMSLLSTLEDIPDLLPETEEKEDGK
AGEEAVKLPRTNSLEDLGIKDAEISRSQTQAGKTDKSKPXXNXEEKKKWAIPVDILSPCE
DFYKRIPKPAFKWPFELDTFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDAAGNFLTKGYYTAVDTKKERTSKHAQ
SFGTKSTPQHTSASQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTS
IEKAEIHSFFQKSVSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHDMADLHAMMMGKPTILQSQFRLTYTMILNLLRVEALRVTDMMSRSFSESH
RDTQAHEKRISHLKQMLASLPPLETEGQLSDILPYYHIATEMQNTREALQKAIMESVNGL
KALSVGRVVIVNNKQHLNALGVILQVSSDSMNRTFTTLIICEKGNEEVAGKAEDSTSFQH
LYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQLRFRADPPGQA
ISTATQELLRLAEANPGGVATLDPVNDLQLKSVDVVEGSMRLRVLQDSLRDFNCVHSPTF
AEQFARIKERMSVQEELDRLLFLVSDQSLMLLPEYHQRIKVLQSLQYIDSSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFNQNTQTEPHITSTLKESIERVLS
VAQRIGQLQRECGIAQTAEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAVRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatacatgtgccccctgtcggccccatggacctgcckctgtccctgctggag
atggggcgctcaggaaggtttgagctcatcacacacccgctgcctgaccagcctttgcct
ccccagagcacgcttccccatggactcccacccaccagcctgggcctggagagagaagtg
gagaaacggtttctacaggacccgtcctggctgcccatccatgacacagactttgccttc
cagaagtttctcaaggtaactgaaaggaaggttgatgtcgactctttgctcagctgcggc
ccgtctccgcttcactctgggctctcggtcgtcagagatccaaccacagggatgctgctg
gacttcacagaggttttacttgaaaacactggcctgtcrgccaaaaactcgctgtcactg
cagcgtcagcctgggcctccttctgaaagccttcggggaagcaacactaactaccccttc
cttcccggaggaatggaggaactcactctggaccaaattaagacragatctgagcaggag
gaggaaatagactttgagaaagatttactgaaaatccctcctggactcaaagctggcatg
gatttctctgacacagatgccaaattagcaaaaccagaggtgaacctcatgtctctgctg
tccacactggaggacattcctgatcttctgcctgaaacagaggagaaggaggatggcaaa
gcaggagaagaggccgtcaaacttcccaggactaacagcctggaagacctgggaataaag
gatgcagagatttcccgttcccaaacacaggctggaaaaacagacaagtcaaagccaaaw
ragaacscagaggagaaaaagaaatgggccatccctgtggacattttgtcaccctgcgag
gatttctacaaacgcatcccaaaaccggcgttcaagtggccctttgagttggacactttc
cagaagcaggctgtgctgaggctggaggcccacgactccgtgtttgtagccgctcacacc
tcagccggcaaaacggtggtggctgagtacgccatygctctgtcccagaaacacatgaca
aggaccatctacacgtctcccatcaaagctctgtccaatcagaaattcagagactttaaa
aacacttttggggacgttggactcctgaccggagacgtccagctcagtccagagtcttcc
tgtctcatcatgaccacagagatcctcaggtcgatgctgtacaacggctcrgaggtcatc
agagacctggagtgggtgatcttcgacgaggtccactatattaatgatgccgagagaggg
gtggtttgggaggaagtgctgatcatgcttcctgatcacgtcagcatcatcctgctcagc
gccacggtgcccaatgctttggagttcagcgagtggatcggtcgtattaagaagaggcac
atttacgtgatcagcaccatgaagcggcccgtacctctggagcattacctgtacaccgga
aacagcaccaagacccagaaggagatgttcctgctggtggacgctgcaggaaacttcctc
accaaaggctactacactgctgtcgatacaaagaaggagcggaccagcaaacacgcccag
tcattcggcacaaagagcacgcctcagcacacctcagccagccaggaccgagcggtgtgg
ctcacgctgctacacttcctgtcccagcggcagcagaccccggtggtggccttcaccttc
tctcggacgcgatgcgacgagaacgcccgctcgctggactccatggacctcaccacctcc
atcgagaaagcggagatccactccttcttccagaagagcgtcagtcggctgcgaggagga
gaccggcagctgccgcagatcttgctcatgcgggaccttctgaagagaggcatcgccgtc
catcacagcgggatcctcccgatcctgaaggaggtcatcgagatgcttttctcccgaggt
ctcgtaaaggtgctgttcgccacggagacatttgcgatgggagtgaacatgcccgccagg
accgtggtgttcgacagcatcaggaaacacgacggcaccggcttcaggaacctgctgcca
ggcgaatacatccagatggcgggcagagcaggaaggagaggcctggacgccacaggaaca
gtcatcattttgtgtaaagcgggcgttcatgatatggccgatctgcacgccatgatgatg
ggaaagcccaccatcctccagtcccagttcagactgacctacaccatgatcctaaatctg
ctgcgggtcgaagcgctccgagtgaccgacatgatgagcaggagcttctctgaaagccac
agagacactcaggcacacgagaaaaggatcagccatctgaagcagatgttggcgtctctt
ccccctctggaaacagagggccagctctctgatatcttgccttattatcacatagcaaca
gagatgcaaaacaccagagaagccctgcagaaagccatcatggagtctgtgaacggactc
aaagcgctgtctgtcggtcgagttgtcatcgtcaacaacaagcagcatcttaacgcgctg
ggagttattctacaggtgtccagcgactctatgaatcgcaccttcacgacgctcatcatc
tgtgagaaggggaacgaggaagtggctggaaaggctgaggacagcacgtctttccagcac
ctgtacaacacagctctgttcatacctgaaggtccatgcagccacacggtgcagaagtta
aaacttcaggacatctccgccatcacagtgaaaaccctcaaagtgattcccgacaggata
atcgataactacaacaagaggcaacagctgcggttcagggccgaccctcccggacaggcc
atctccacggcgacacaggagctgctgcgcctggccgaggcgaacccgggcggcgtggcc
accctggacccggtcaacgacctccagctgaagagcgtggacgtggtggagggctccatg
aggctccgcgtgctgcaggacagcctgcgggacttcaactgcgtccactcgcccaccttc
gcagagcagtttgctcgtattaaggagaggatgagcgttcaggaggagctggaccggctt
ctgttcctggtgtcggaccagtccctgatgctgctgcctgaataccaccagaggatcaag
gtccttcagtcgctgcagtacatcgacagcagcggcgcggtgcagctgaaaggcagagtg
gcctgtcagatcagcagccacgagctgctgctgaccgagctgctgttcgagaacgtcctg
agcccgctggcgcccgaagagagcgccgccctgctgtcctgcctggtcttcaaccagaac
acgcagacggagccgcacatcaccagcactctgaaggagagcatcgagcgcgtgctgtcg
gtggcccagcggatcgggcagctgcagcgggagtgtgggatcgcacagacggccgaggag
tttgtgggccagttcaagttcggcttgactgaggtggtgtactgctgggccagaggcatg
ccgttcgctgagatcgcgctgctcacagacgtgcaggagggcacggtggtccgctgcatc
cagcgcctggacgaggtgctgaaggaggtgcggcaggccgcccgcatcgtgggagactcc
gtcctgggcagcaagatggagaaagcctcgttggccgtccgcagggacatcgtcttcacc
gcctccctctacacccactga
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integrated database retrieval system
