Poecilia reticulata (guppy): 103473052
Help
Entry
103473052 CDS
T05149
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103473052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103473052
03036 Chromosome and associated proteins [BR:
pret03036
]
103473052
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103473052
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103473052
mRNA degradation factors
5'-3' decay
Decapping complex
103473052
Chromosome and associated proteins [BR:
pret03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103473052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
MS_TIM-barrel
Motif
Other DBs
NCBI-GeneID:
103473052
NCBI-ProteinID:
XP_017162873
LinkDB
All DBs
Position
LG11:complement(27759390..27770690)
Genome browser
AA seq
446 aa
AA seq
DB search
MATARTENLGPVVMGLNKQNGQLKGQTKPAAGPPASTQGKNPAGSNQDGGGIKFGDDWKK
CLQLPPKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQICIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDEADKLLSQ
DFVVLIEDIISFLAKNRQILLYSATFPISVQKFMVSQPDGPLRSRTVFPGRAREGPVCFQ
EYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH
LGLAINLITSEDRFNLKAIEEQLVTDIKPIPSSIDKSLYVAEYHSGPVADGDEDEAEVKP
PRHAGQSAESDQSGSGKICDGFPCSD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcccgaacggaaaacctcggtccggtcgtgatgggactgaataagcagaac
gggcagctcaaaggacagaccaaacctgctgcaggacccccagcatcaactcaaggaaag
aatccagctgggagcaaccaggacggcggaggaatcaagtttggagacgactggaagaaa
tgcctacagctccccccgaaggacaacagggtcaaaacctcagacgtcacggcaaccaag
ggcaacgagtttgaagattactgcctgaaaagggaactcctgatgggaatctttgagatg
ggctgggagaaaccgtcaccgatccaggaggagagcattcccatcgcgctgtccgggcgc
gacatcctggcgcgagcgaagaacgggacggggaaaagcggcgcctacctgatcccgctg
ctggagcggatagacctgaagaaggaccacatacaggccatcgtcatggtgcccacacgg
gagctggcgctgcagatgagccagatctgcatccagctcagcaaacatctgggcggagtc
aaagtgatggcgacgaccggaggaaccaacctgagggacgacatcatgcgcctggacgag
acggtgcacgtcgtcatcgccacgcccggccgcatcctggacttgataaagaaaggcgtg
gcgaaggtggaccgggtccagatgatggtgatggacgaggcggacaagctgctctctcag
gacttcgtggttctcatcgaggacatcatcagcttcctggccaagaaccggcagatcctg
ctctactccgcaaccttccccatcagcgtccagaagttcatggtgagtcagccggacggg
cctctccgcagccgtacggttttccctggaagggcgcgggaaggacctgtctgttttcag
gagtaccggaaccgcgtgttccatgacttcaggaacggactctgcaggaacctggtctgc
accgatctcttcaccagaggaatcgacatccaggctgtgaacgtcgtcatcaacttcgat
ttccctaaaaacgcagaaacgtacctgcatcgcatcgggaggtccgggcggttcggccac
ctgggcctggccatcaacctgatcacctcggaggaccgcttcaacctgaaggccatcgag
gagcagctggtgaccgacatcaagcccatccccagcagcatcgacaagagcctctacgtg
gccgagtaccactccgggcccgttgccgacggcgacgaggacgaggcggaagtgaagccg
ccgcgccaygccggacagagcgcggagtcggaccagagcggttctggaaagatctgcgac
ggttttccttgttctgactga
DBGET
integrated database retrieval system
