Poecilia reticulata (guppy): 103473120
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Entry
103473120 CDS
T05149
Symbol
ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pret
Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pret03041
]
103473120 (ythdc2)
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103473120 (ythdc2)
Spliceosome [BR:
pret03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103473120 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
ATPase
nSTAND3
Ank
AAA_22
PhoH
Ank_5
Ank_4
SRP54
AAA_30
AAA_7
CdiI_N
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
103473120
NCBI-ProteinID:
XP_008421311
UniProt:
A0A3P9P806
LinkDB
All DBs
Position
LG12:complement(592026..638444)
Genome browser
AA seq
1418 aa
AA seq
DB search
MATNRQKLGGSLTFYSKCTMFNAMRAPQKPYRRQNMSPQGSGSSDSKTIHIGEEVKIAVN
LSLERFRYSDEKEMEFPSSLSSTERAFVHRLAQSLGYISKSKGKGSNRFLTVRKRDVSDK
PRPSTSLDLCPSSLYFIRSLLQRFPTSKKERADMHLNIKSGMSLATETNSGFDRNRASGR
LNNGIPMVPRKRAPSELDIFRSSLPVHEHQEEIVRLIRENRVVLVLGETGSGKTTQIPQF
LLDDCSRNGKPCRIFCTQPRRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLT
FCTSGVLLRTLMAGDTSLTTVTHVIVDEVHERDGLTDFLLTKMRDIVQRIPTLKLILSSA
ALDIDLFLQYFDSCPLIHLKGKQFEVKELFLEDILRQTGFNRKDIWKYQEETQRKEGKQK
RLTEWCETVESSSVGGKRTHMLAPGLLHAGSCGDREDEGSIKLNENDTDQLEPWLLREMD
SCISSIFLHEDQEAFNQLFNLILNESVPVDFMHSETGSTALMVSAARGFLPQTQQLLSMG
ADINIKASNGWTALDFAKHFQQTEAMDILKSSIPLGEVSSLEESALVQCSPTELSSEEQE
LLKQYHHSFDDQRVDLDLIMTLLHNICTTTTEGAVLIFLPGYDEIVSLRDRILFDDKRFS
THSESYQVFTLHSDMQTLDQKRAMKPAPSGVRKIILSTNIAETSITIDDVVFVIDSGKIK
EKSFDTLSRVSMLKTVWISKASVLQRKGRAGRCRPGICFHLFSRLRFNNMQQFQVPQLLR
MPLQELCLQTKLLAPSSCPVAEFLSKAPQPPPTHAIQSAVHMLKTIDALDQNEDLTDLGF
HLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFTLPAESSQKRAALQSRKRFT
SNTFSDHMALLRAFQAWQKARSEGWERSFCERNFLSQSTMDMILGMRTQLLGQLRAIGFV
RARGGSDIRDVNLNSENWAVVKAALVAGMYPNMVHVNKKTSLLSSNREKKVHFHPTSVLS
QLQLKENSSSKSGQTLPTDWLIYDEMSRGHRMASVRCCSVVTSITVAMFGGGTKLLSSTL
HESAIQKRYENLLDDMSDSDTEDLVEIKIDDWLVFGLERETAVLVSELRQKWQNLLIKRI
RCPSKPWSQQDEAVIQTLVSVLGAEEQEAGLQQPTGIGQRPRPMTSEDGPRSSGRNSKAS
PQLPSHNTNDKPRRMLSSDLLKTNSHRRDEVSLAIKKLWDYPSSSSSSSCSLTLDWPPES
PSRKLVLKSVSQKPTVPSVRYFIMKSNSIRNIEISQQKGIWSTTPSNETKLTQAFLANSF
IILIFSVQGSGHFQGYARMTSVVSQESCQDWGFMGLGGVFSVEWIHKESLPFPFTQHILN
SWNDNKRVQVSRDGQDLEPQAGSQLLSLWERTSGNRLH
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaccggcagaagttaggaggttcactgacgttttactccaagtgcaccatg
tttaatgctatgagggcaccacaaaaaccatacaggcgtcagaacatgtcacctcaaggc
tccggttccagtgactcgaaaacaattcacatcggtgaagaagtcaagatagcagtaaac
ctctctttggagaggtttcgctacagtgatgaaaaagagatggaattcccatcctcactg
tccagcactgagcgggcctttgttcatcgactggcccagtccctgggctacatttccaaa
agcaaaggaaaaggctccaatcgttttctgacagtcaggaagagagatgtttcagacaaa
cctcggcccagtacatctctcgatctgtgccccagctccttatatttcatccgcagccta
ctgcagagatttcccaccagcaagaaggaacgtgcagacatgcatctcaacatcaaaagt
ggcatgtctctggctacagaaactaatagcggctttgacaggaacagagcaagtgggcgc
ctaaacaatggcattcctatggttcctaggaagagggcaccatcagaactggatattttc
cgaagctcccttcctgtgcatgagcaccaggaggagattgtccgactgatcagagaaaac
agggtggtacttgttttgggagagactggctctggaaaaactacacagattccccagttt
ttgttagatgattgtagcaggaatggaaaaccctgcaggattttctgtactcagcccagg
cgcctggctgccatcgctgtggctgagagagtcgcagcagagagaggggagagtgttggc
cagacagttggttatcacatcagactggaaagcagggtctcccccaagacgctgctaacc
ttctgcacaagtggagtcctcctcagaacactgatggcaggggataccagcctcacaact
gttacccatgtcattgtggatgaggttcacgagcgtgatggtctgactgacttccttctt
actaagatgcgggatattgtccagaggattcccacactgaagctgattctctctagtgca
gctctggatatagatctattcctccagtactttgactcctgccctttgatccaccttaaa
gggaaacaatttgaagtgaaagagctctttttggaggatatcttgaggcagacgggcttt
aatagaaaggacatctggaaatatcaggaagagactcagagaaaagaggggaagcagaaa
cgattgacagagtggtgtgaaacagtggagagcagttctgttggtgggaaacggacccac
atgttggctccaggcttacttcatgccggcagctgtggggacagagaagatgagggctca
attaagctgaacgaaaatgacacagatcagcttgaaccatggctgctgcgggagatggac
tcctgcatttccagcattttcctgcatgaagaccaggaggctttcaatcagctcttcaac
ctcattctaaatgaaagtgtccctgtggacttcatgcacagtgagaccggctccacggct
ctgatggtgtcagcagcgcggggattccttccacaaacgcagcagctgctcagtatgggt
gctgatatcaacataaaggcatctaacgggtggactgctttagactttgctaaacacttc
cagcagacagaagcaatggatatcctcaaatcttcaatacctttgggggaagtgagcagc
ctggaggaatcagcgttggtacagtgcagtcctacagagctgagcagtgaagaacaagag
cttctcaaacagtaccaccacagctttgatgaccagcgggtggacttggatctcatcatg
acattgctccacaacatctgcaccaccactactgagggtgctgtcctcatatttcttcct
ggatatgatgaaattgtgtcattgagagatcgcatcctctttgatgataagaggttctcc
actcactctgagagttaccaggttttcactctgcattctgacatgcagactctggatcag
aaaagagccatgaaaccagctccatctggtgtccggaagataattctctctactaacatt
gctgaaacaagcattactattgatgacgtagtcttcgttattgattcaggaaagatcaaa
gagaaatcctttgatacgctgagtcgggtttctatgttaaagacggtttggatctcaaaa
gccagtgttttgcaaagaaaaggaagagctggccgctgtagacctgggatttgcttccat
ctcttcagtcgtctcagattcaacaatatgcaacagttccaggttccacagctgcttcgg
atgccactgcaggaattgtgtctacagaccaagctgttggctccttcatcctgccccgtt
gccgagttcttatctaaagctccacagccacctcccacacatgcaatccaaagtgctgtc
cacatgctaaagacaatagatgctctggaccagaacgaagacttaaccgacctgggcttc
cacctggctgatctacctgtggagccccatctgggcaaaatggtgttgtgcgctgttgtg
ctcaagtgtctggaccccattctcaccattgcctgtactctggcctatcgtgaccctttt
accctccctgctgaaagctcccagaaaagagctgctctgcagagccgcaaacgtttcacg
tccaacaccttcagcgaccacatggccctgctcagagctttccaggcatggcagaaagct
cgcagtgaaggctgggagagatccttctgtgaaaggaacttcttgtcccagtctacaatg
gacatgattcttggcatgaggacacaactgttgggacaacttcgtgctattggttttgtg
cgcgcccgtgggggcagcgacatccgtgatgttaatctgaactctgaaaactgggctgtc
gtgaaagcagccctggtggctggaatgtatccaaacatggttcatgtcaacaagaagacc
tctctgctctccagtaacagagagaagaaggttcatttccatcctacatcagtcctgagc
cagctgcagttgaaggagaacagcagctccaaatcaggtcagaccctccccacagactgg
ttgatctatgatgagatgagcagaggtcacaggatggccagtgtccgatgttgctccgtg
gtgacctccatcacagtggccatgtttggaggtggtaccaaacttctcagctccacactt
catgaaagtgctattcaaaaaagatatgaaaatcttctggatgacatgagtgacagtgac
acagaagacttagtggagataaagattgatgactggcttgtcttcgggcttgagagagag
actgcagtactggtgtctgaactcagacagaagtggcagaacttgcttataaagaggatc
cgctgtccttccaaaccctggtctcagcaggacgaggcagtcatccagaccttagtgtct
gtgctgggtgctgaggagcaggaagctggcctgcagcagcctacagggattggtcagagg
cctaggcctatgacatccgaggatgggccaaggtcatcagggaggaactccaaggccagc
ccccagctgccctctcataacacaaatgacaaacctcgtcgaatgctgtcttctgacctg
ctgaagactaactcccacaggagagatgaagtctcactggccatcaagaagctgtgggat
tatccgtcttcctccagtagttcttcctgctctttaactctggattggccccccgagtct
ccctcaagaaagctggtcttaaagtctgtgtctcagaagccgactgtgccatcagtccga
tacttcattatgaagagtaacagcatcagaaacatagagatttctcagcagaaaggcatc
tggtctactacaccgagcaacgagaccaaactcacccaagctttcctggcaaatagcttc
ataattctcatcttctctgttcagggatctggacacttccagggctacgctcgcatgaca
tctgtcgtcagccaggagagctgccaggactggggcttcatggggctcggaggagttttc
agtgtagagtggatccataaagagagtcttcccttccccttcacccagcacatcctcaac
tcatggaatgacaacaagagagttcaagtcagcagggatggacaggacttggagcctcag
gctggcagccagttgctgtctctgtgggagaggacttctgggaatcggcttcattag
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integrated database retrieval system
