Poecilia reticulata (guppy): 103473474
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Entry
103473474 CDS
T05149
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103473474 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103473474 (skiv2l2)
03041 Spliceosome [BR:
pret03041
]
103473474 (skiv2l2)
03009 Ribosome biogenesis [BR:
pret03009
]
103473474 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
pret03016
]
103473474 (skiv2l2)
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103473474 (skiv2l2)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103473474 (skiv2l2)
Spliceosome [BR:
pret03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103473474 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
103473474 (skiv2l2)
Ribosome biogenesis [BR:
pret03009
]
Eukaryotic type
Pre-60S particles
Helicases
103473474 (skiv2l2)
Transfer RNA biogenesis [BR:
pret03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103473474 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
103473474
NCBI-ProteinID:
XP_008421981
UniProt:
A0A3P9N4C1
LinkDB
All DBs
Position
LG12:9625107..9642480
Genome browser
AA seq
1036 aa
AA seq
DB search
MADPFGDGLFSVFDDEQQGSAGKKTPTGASTETGKSAGKSGADRDAGPSVRVKRETDSDG
GEEVVFGKKPRHDVVSSSDLNLTEFMPQVKVEQVETVEGCSHEVALPADEEYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGESGGGSGGGKWDRNRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNNDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKLEDQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
DTDFGWGVVVNFNKKTNAKASGDSEPLYVVEVLLHCSKESVKNSATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYTHTLHSDPNLESVYSLCERKAQIAAEVRTAKRELKKARTVL
QMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQAT
ALLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHL
MDVVFAWSNGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
IAKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccttttggagacggattgttcagcgtgtttgacgatgaacaacaaggttct
gctggcaaaaagacgcccacgggtgcctctacggagactgggaaatctgcaggtaaaagc
ggtgctgacagggatgcaggtccgtctgttcgggtcaagcgggagacggacagtgacggc
ggagaggaggtggtgtttgggaagaaacctcgccatgatgtagtctcatccagtgaccta
aatctcacagaatttatgcctcaagtgaaggtggagcaggtggaaactgtggaaggatgc
tcacatgaggttgctctgccagctgatgaggagtataaacctctgaaaccaagagtggga
aaagcagctaaggaatacccgtttgtactggatcccttccagcgtgaggctatcctatgt
atcgacaacaaccagtctgtgcttgtgtctgcacacacctctgcaggaaaaactgtctgt
gcagaatatgccatcgctctggctcttagagagaagcagagagtcatcttcaccagtccc
attaaagcactctctaaccagaagtacagagagatgtatgaagagttccaggatgtaggg
ttgatgactggtgatgttaccatcaaccctactgcctcctgccttgtcatgacaacagag
attctaaggagcatgctgtaccggggatctgagatcatgagggaggtagcctgggttatc
tttgacgagatccattacatgagagatgcagagcgtggcgtggtttgggaggaaaccatc
atccttcttcctgacaatgtgcattatgtattcctgtctgctaccatcccgaatgccaaa
cagtttgctgagtggatctgtcatttacacaagcagccctgccatgtggtttacacagac
taccggcccactcctctgcaacattatatttttccagcagggggcgatggactccaccta
gtggttgatgagaatggggacttcagagaagataatttcaacacagccatgcaggttctc
agagatgctggggagtccgggggcggcagtggaggtggcaagtgggatcgaaaccgaaag
ggaggcactaagggaccgtccagtgttttcaagatagtgaagatgatcatggagaggaac
ttccagccggtgatcattttcagcttcagtaagaaagactgtgaggcctacgcccttcag
gtgtccaagctggattttaacaatgatgatgagaaacgtctggttgaagaagtgttcaac
aatgcagtggactgtctttcagatgaggacaagaagctgcctcaggttgagcatgtgctg
ccactcttgaagagagggataggaatccatcatggaggactgctgcccatcctcaaagag
acaattgagattctcttctctgagggtctgctcaaggccttgtttgctacagagaccttc
gccatgggtattaacatgccagctcggaccgttctcttcaccagcgcacgcaagtttgat
ggcaagaaccaccgctttattacatcaggtgagtacatccagatgtcagggcgcgctggc
aggagaggaatggatgacagaggaatagttatttttatggtggatgagaagatgagtcca
gctgtgggcaaacagctactgaagggctcagcagaccctttgaacagtgccttccacctg
acctacaacatggtgctcaacctgctgcgtgtagaagagatcaacccagagtacatgctg
gagaagtccttctaccagtttcagcactacagagctttgcccggcgtcgttgagaaaatt
aagaagttagaggaccaatatcacaccattgagattcctaacgaggagagtgttgttaca
tactttaagatcaggcagcagctggctaagctgggtaaagagatacaagaattcatccac
aagcccaaatactgcctgcccttccttcagccgggccggctcgtgaaggtgaaaaatgag
gatactgactttggctggggagtggttgtaaactttaacaagaaaacaaacgcaaaggcc
agcggagactctgagccgctgtacgtagtcgaggttttgcttcactgtagtaaagaaagt
gtaaaaaactctgcaactgaagcggccaagcctgctgctccaggggagaccggagagatg
caggtggttccagtgatgctccacctcctcacttcgattagctcagttcgtctttacatc
cctaaagatctcaggccttttgacaacagacagctcatgctcaagtccatacaggaggtg
cagaagcggttcccggatggcgttcctttactcgaccccatcgatgacatgggcatcaaa
gaccccggcctgaagaaggtcattcagaaggtggaggccttcgaacaccggatgtacaca
cacacactccacagcgaccccaacttagaatccgtctactccctgtgtgagaggaaagca
cagattgcagccgaggttcggaccgccaaacgggagctgaagaaagctcgcaccgtcctg
cagatggacgagctgaagtgccgaaagagagtcctccgaagactcggcttcgccagcccc
tctgatgtcatcgagatgaaaggcagggtcgcctgtgaaatcagcagcgccgatgagctc
ctgctgacagagatggtgtttaacggcctcttcaacgacctgacggtggaacaagccacc
gctctcctgtcctgcttcgtcttccaggagaacgccaacgagatgccaaagctaaccgag
cagctggccgcgccgctcagacaaatgcaggagtgtgcgaagcgcatcgccaaagtgtcc
gcagacgccaagctggaggttgatgaggagacgtacctaaaccagttcaaacctcacttg
atggatgtggtgttcgcctggtccaacggggccacgtttgctcagatctgcaagatgacg
gacgtctttgaaggaagcatcattcgctgcatgcggcgcctggaggaggtgctgcgacag
atgtgctctgcagccaaagccatcggtaacactgaactggagaacaagtttgcagaaggc
atcgcaaagattaagagagacatagttttcgctgccagtctctatttatag
DBGET
integrated database retrieval system
