Poecilia reticulata (guppy): 103475050
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Entry
103475050 CDS
T05149
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103475050 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103475050 (ddx6)
03036 Chromosome and associated proteins [BR:
pret03036
]
103475050 (ddx6)
Enzymes [BR:
pret01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103475050 (ddx6)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103475050 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
103475050 (ddx6)
Chromosome and associated proteins [BR:
pret03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103475050 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
103475050
NCBI-ProteinID:
XP_008424655
UniProt:
A0A3P9PPN5
LinkDB
All DBs
Position
LG13:complement(29542981..29557611)
Genome browser
AA seq
482 aa
AA seq
DB search
MSTTRTENPVILGLSNQNGQLRSSVKPAGAPGGGGGGPQPPQLNQMIKGTINGNSQPAPP
TNAVIKPGDDWKKNLKLPPKDTRIKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCLQALVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQ
MVVLDEADKLLSQDFVVMMEEMLGFLPKQRQILLYSATFPLSVQKFMNAHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKAIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEV
KQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaccaggacagagaacccagtgattttgggcttgtcgaaccagaacggacag
ctgaggagctcggtgaaacctgcaggggcaccaggtggtggtggaggaggtcctcaacct
ccacagttaaaccagatgataaaaggcacaatcaacggcaattcccagccagcccctcca
acaaacgctgttatcaagcctggagacgactggaagaagaatttgaaattgcccccaaag
gacacgaggatcaaaacttcggatgtgactgcaactaaaggcaatgagtttgaagattat
tgcctaaagagggagctacttatgggaatctttgagatgggctgggaaaagccatctcca
attcaggaggaaagcattcccattgcactgtcgggcagggatattttggcccgagccaag
aacggcacaggaaagagtggagcctacctcattcccctgctggaacgcatcgacctgaag
agagactgtttacaggctttggtcatcgtgcccaccagagaactggcactgcaggtcagc
caaatatgcatccaggtcagtaaacacatgggcggcgtgaaggtcatggcgaccacaggg
gggacgaacctccgcgacgacatcatgaggctcgacgaaacggtacatgtggttattgcg
acaccagggaggattttagacctaatcaaaaaaggagtggccaaagtcaatcaggttcag
atggttgttctggatgaagccgacaagctcctgtctcaggactttgtggtcatgatggag
gagatgctgggcttcctgcccaagcagaggcagattttactttactccgccactttcccg
ctcagcgtgcagaagtttatgaacgcacatttgcaaaaaccttatgagatcaacctaatg
gaggagctaacgctgaagggagtgactcagtattatgcttatgtaacagaaaggcaaaag
gtccattgcctcaacaccttgttctccaggctccagatcaaccagtcgataatcttctgt
aactcctctcagagagtggagcttcttgccaagaagatttcccagcttggatattcatgt
ttctacattcatgccaagatgagacaggaacatcgcaaccgtgttttccatgactttaga
aacgggctgtgccgaaacctggtctgcactgacctcttcacgagaggaattgacattcaa
gctgtgaatgttgtgataaactttgattttcctaaactgggagagacataccttcaccgc
attgggagatctggacgcttcggccatcttggtttggccatcaacctcatcacgtacgac
gaccgcttcaacctgaaggcgatcgaggagcagctggggacggagatcaagcccatcccc
ggcatcatcgacaagagcctgtacgtggccgagtaccacagcgagagcggcgaagaggtc
aagcagtga
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