Poecilia reticulata (guppy): 103475246
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Entry
103475246 CDS
T05149
Symbol
sox1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
pret
Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pret03000
]
103475246 (sox1)
Transcription factors [BR:
pret03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
103475246 (sox1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
SelP_N
Motif
Other DBs
NCBI-GeneID:
103475246
NCBI-ProteinID:
XP_008424955
UniProt:
A0A3P9P5A0
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Position
LG2:complement(5030088..5032084)
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AA seq
356 aa
AA seq
DB search
MYSIMMETDLHSPVVPQTNPSNPGGHAGGGGGGPAGKIPQERIKRPMNAFMVWSRGQRRK
MAQENPKMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKT
LLKKDKYSLAGGLLGSSPGVGMGGGQRLESPGAGHVGASAGYASHVNGWANGTYSGQVAA
AAAAAHAMMQEAQLAYTQHPGSGAHPHHHPHHHHHHPHHHPHNPQPVHRYDMSALSYSPI
SNSQSYMSASPPGYGGITGYTHQHQSSGVSPVSGAIGGTLGSLVKSEPSVSPPVSTARAP
PPCPTGDLRDMISMYLPTGEAAGGDSVQSRLHVLHPQHYQSGGSAAVNGTVPLTHI
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatcatgatggagacggacctgcattcccccgtggtgccccagaccaaccca
tccaacccggggggacatgcgggaggaggaggcggggggcccgctgggaagatcccccag
gagaggatcaagagacccatgaacgccttcatggtgtggtcccggggccagcggaggaaa
atggcacaggagaaccccaagatgcacaactcggagatcagcaagcggctgggcgcggag
tggaaggtgatgaccgaggcggagaagagacccttcatcgacgaggccaagcggctccgg
gccatgcacatgaaggaacacccggactacaagtaccgcccgcggaggaagactaagact
ctactcaagaaggacaagtactcacttgccggcggactcctcggttcatcgccgggtgtg
gggatgggcggcgggcagcggctggagagccccggagcgggacatgtgggggccagcgcg
ggctacgcctcgcatgtgaacggctgggcgaacgggacgtactcgggtcaggtggcggcc
gcagcggcggcggctcacgccatgatgcaggaggcgcagctggcgtacacccaacacccg
ggcagcggggctcacccgcaccatcacccgcaccaccaccaccaccacccgcatcaccac
ccgcacaacccgcagccggtgcacaggtatgacatgagcgctttgtcttacagcccgatc
tcgaactctcagagctacatgagcgcctctccgccgggctacggcggcatcaccggctac
acccaccagcaccagagctccggggtctcccccgtgtccggggccatcggagggactctg
ggttcgctcgtgaaatcggagccgagcgtcagcccgccagtttccacggcgcgcgcaccg
ccgccgtgccccacgggagacctgcgggacatgatcagcatgtatctgcccactggcgag
gcggcgggcggcgactccgttcagagcagactgcatgtgctgcacccgcagcactaccag
agcgggggctccgccgcggtgaacgggacggttcccctcacgcacatttaa
DBGET
integrated database retrieval system
