Poecilia reticulata (guppy): 103475298
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Entry
103475298 CDS
T05149
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04382
Cornified envelope formation
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
pret04518
Integrin signaling
pret04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103475298
04518 Integrin signaling
103475298
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103475298
09142 Cell motility
04820 Cytoskeleton in muscle cells
103475298
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103475298
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pret04147
]
103475298
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103475298
Exosome [BR:
pret04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103475298
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103475298
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103475298
NCBI-ProteinID:
XP_008425040
LinkDB
All DBs
Position
LG13:complement(33374470..33409330)
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AA seq
1671 aa
AA seq
DB search
MASPAAARRRIPRLLVLLLVLGALPLLTNGKLVCHCTGKSRCHCEGVKGQKGEAGFPGDP
GLPGVMGFPGSEGHLGSPGETGNPGNAGSRGIKGSRGPLGRPGFPGPPGLPGIPGHEGPM
GRPGLPGCNGTKGEAGYRGLPGPSGPPGPRGPSGPRGLKGDSVVIPYSQEIKGAAGRQGP
TGREGQSGHGGQSGEPGRIGTPGLPGRQGPAGIQGEKGQEGSSPTSPGPQGWKGDRGPPG
IPGKQGIKLYAEGPKELKGEPGEVGQKGFPGLAGEPGSPGAKGEKGDRGEPGSLGKPGKT
GLPGELGQPGDTGDFGFIGPPGVDGAAGEKGDRGPPGPPGETVFNHNLVKGQPGFPGPLG
PAGFPGIQGLIGFPGLKGESGEASIGPPGSPGPTGSDGPKGEPGPPGPVVTGPPGLTGAP
GPLGLQGEPGEPGIPNVDIVGQGLPGMKGSKGSQGPPGDTGMAGEQGQKGEACTDCRVQP
GPPGPQGPPGAPGQNGLPGAAGSPGPAGNKGFKGAAGPPGVQGPQGFPGPPGPLGPPGEP
GLNPGPGPKGEAGDRGGAGPQGGAGQDGFPGPPGPKGETGEKGNPGRQGSKGHRGPLGPP
GARGATGPLGPPGRDHVGRPGPTGPKGANGYMGDRGAPGPRGEKGSKGNIQNIPGDPGPK
GCRGRPGEPGREGEAGLPGLLGWPGPKGQKGCDGSSQMGNQGNVGSKGDKGSRGEPGSPC
YGMKGRAGPPGPPGPVGPKGNRGFGRPGEAGKLGPPGQDACDGPPGDPGPPGRPGVQGPA
GQDGRPGPKGHRGVDGEAGSRGPAGPCVPGPPGPPGPRGLAGPIGPTGTKGPPGLKGDPG
THCPRVPGPRGPPGPPGPDGGPGPAGEVGPKGWRGNPGDPGAPGRRGDMGVPGPMGRPGN
FGPPGPCGEPGPKGQKGQDGSRGSQGPPGEPGDKGATGPKGFPTVISTTGDPGDPGLPGP
RGLTGGQGEGGPPGNRGPGGMDGKPGGPGPPGRPGDPGRDGERGPCGYTGPPGDKGRTGR
PGDPGGKGAQGANGVPGSDGGPGKPGDKGRKGEAGFGRGGTGCKGMKGIPGPPGPPGPKG
AGGPAGDAGSPGPCGPCGPVGPKGPPGSKGCAGRAGQKGLDGPPGNCGPPGPPGGPGCQG
SPGAPGAPGPKGNQGRDGIPGPDGEKGDVGSCLPGPKGPAGGRGPPGCVGDRGPPGCCGP
PGPPGPEGDPGYRGAKGPPGPPGSAGKKGGECIDGTKGYPGFPGPKGPKGPKGPPGPPGP
PGPGYKGHKGVKGEPGRPGPPGPTGDPGPCGPPGPRGPPGCPGEKACRGPIGPRGQIGME
GGKGPPGNRGPDGPPGRTGNPGPNGKDSYISVWPEPGDPGEEGALSQVGGIGFPGFPGLR
GADGSKGSLGAPGWTGIPGRDGLRGEDGERGRIGRKGADGDRGRAGAKGPPGEPGEPGGG
PPPRRNGFLFSRHSQDSAAPACPAQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCLQRFS
TAPFLICEVGEECRYAERNDFSYWLSNIRSPPNQTDPEAALEAKISKCSVCESEANVIAI
HSQTSAVPPCPADWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFMECSGSS
GTCKYDNGLYSYWLAALDPDNMFRRPSSWILPGNNPDNISRCRVCMKIMQM
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccggcggccgcgaggcggaggatcccccgcctgctggtcctgctgctggtc
ctcggcgcgctgccgctgctgaccaacggcaaactggtctgtcactgcaccgggaagtcc
cgctgtcactgcgagggggttaaaggtcaaaagggagaagcaggattcccaggagaccca
ggacttcctggagtaatgggattccctggaagcgaaggtcacctagggtcaccaggagaa
acgggtaacccaggaaatgcaggcagtcgaggaattaagggctctcgggggcctcttgga
agaccaggttttccaggacctccaggtctcccagggattcctgggcatgaagggccaatg
ggtcgacccggactcccaggatgcaacgggacaaaaggggaggccggctaccgagggctg
cctggaccttcaggaccgccgggaccacgggggccctcggggccacgaggcctgaaggga
gactcggtcgtgattccctacagtcaggaaatcaaaggagcagcgggacgacaagggcca
accggcagagagggccaaagtggacatggaggacagtcgggcgaaccgggacggatcggg
acccctggacttcctggaagacaaggacctgcaggaatccaaggagaaaagggacaggaa
ggttccagtccgacgagtcccggtccgcagggctggaagggcgatcgaggccctccgggg
atccctgggaagcagggcatcaaactctacgctgaaggacccaaagagctgaagggcgag
ccaggcgaagtggggcagaaaggtttccccggtcttgctggggagccggggagcccgggg
gcaaaaggagagaagggcgacagaggagaacccggctcactgggaaaaccagggaagacg
ggattaccgggagaactgggacagccgggcgacaccggagacttcggcttcatcggcccg
cccggcgtcgacggcgccgcgggagaaaaaggcgaccgagggcctccgggtcccccagga
gagaccgtctttaatcacaacctggtgaagggccagccaggattccccgggcccctggga
cccgccgggttccccgggattcaaggtctgatcgggttcccgggactgaagggcgagtca
ggcgaggcctccatcggaccgccaggttctcctggtccaactggctcagatggtcccaaa
ggggaaccaggaccgccgggcccggtggttaccggaccgccaggattgaccggagcccca
ggacctcttggacttcagggagaaccaggagagcctggaataccaaacgtggacatcgta
ggacagggtcttcccggtatgaaaggctcaaaaggctctcaaggccctccgggggacacg
gggatggctggggaacagggtcagaaaggggaggcttgtacagactgccgtgttcagcct
ggccctcctggacctcagggaccaccaggggcgccaggtcagaacgggttgccaggtgca
gctggatctccaggaccagcaggtaataaaggcttcaaaggagccgcaggcccacctgga
gtacaggggccccaggggttcccggggcccccggggcccctggggcctccaggcgagccg
ggcttaaaccccgggccggggccgaagggggaggccggggaccggggcggtgcggggccc
cagggaggggcggggcaggacgggttcccaggacctccgggtcccaaaggcgaaacggga
gagaaaggaaacccggggcgtcaagggtcaaaaggtcaccggggcccgctgggcccccct
ggtgccagaggagcgacggggccactgggcccaccgggtcgcgaccatgtgggtcgtccg
gggccgacagggcccaaaggagccaacggctacatgggagatcgtggagcaccgggccct
agaggagagaaaggctctaaggggaacatccagaacattccaggagatccgggaccgaaa
ggctgcagaggacggccgggggaaccgggacgtgaaggtgaggctggacttccgggtctc
ctaggatggcctggtccaaaaggtcaaaagggctgcgacggttcctctcaaatgggtaac
cagggcaacgtggggtcaaaaggagacaaggggtccagaggagagccagggtccccctgt
tatggcatgaaggggcgagcggggccgcccggccccccggggcccgtcggcccaaagggg
aacagaggctttgggcggccgggtgaggcgggtaaactaggccctccggggcaggatgcc
tgtgacggacctccaggcgatccgggaccgccgggacggccgggagttcagggacctgca
ggacaagatggccgcccggggcccaaaggtcaccgtggcgttgatggggaagccggctcc
aggggtccggctgggccctgcgtccccggacctccaggacctccaggaccgcgaggtctg
gccggtccaattggacccacaggaacgaagggcccgccgggtctgaagggagatcctggg
acccactgccccagagtccccgggcccagagggcccccagggccaccgggacctgatgga
ggtccagggccggccggggaggtgggacccaaaggctggagagggaatccgggagaccct
ggggctccagggcgaagaggagacatgggtgtccctgggccgatggggcgtcccggaaac
ttcggaccgcctgggccctgcggggaaccgggaccaaaaggtcagaagggtcaagatggt
tcaagaggttctcagggacctccaggagagccaggggacaaaggggcaaccggaccaaaa
gggttcccaacagtcattagcacaacgggggatcccggagaccctggacttccaggaccc
agaggtctcactgggggacaaggagaaggaggccccccagggaaccgagggccagggggc
atggatggaaaacctgggggtccggggccgccaggacgtcctggagatccaggtagagat
ggagagagaggtccttgtggttacactggaccccccggggacaagggacgcaccggcaga
ccaggtgatccaggtggaaaaggtgcacagggagccaatggggtccctggttcagatgga
gggccagggaaacccggagataagggacgtaaaggagaagcgggttttggacggggaggt
acaggctgtaaaggaatgaaggggattcctggacctccaggacctccaggtccaaaagga
gcaggaggaccagctggagacgctggctctccggggccctgcggtccttgtgggcctgtg
ggacccaaagggccgcctggatccaaaggttgtgctggtagagccgggcagaaaggtttg
gacggccctcctgggaactgtggccctccagggcctcctggaggtccaggatgccagggg
tctcctggagcgcctggtgcaccgggacccaaaggaaaccagggccgggacgggatcccc
gggcctgacggagagaaaggagatgtgggctcatgtctacctggacctaaggggccggca
ggaggaagaggtccccctggatgcgtgggggacaggggccctccgggatgctgtgggcct
cctggaccccctgggcctgaaggagacccgggttacagaggcgctaagggccccccaggg
cctcctggtagtgctgggaagaaagggggagagtgcattgatgggacgaagggatatcct
ggatttcctggacctaaaggaccgaaaggccctaagggtccgcccggtccgccaggtccg
ccaggccctggttacaaaggccataaaggcgttaaaggagaaccgggtcgcccaggacca
cccggaccaaccggtgaccccggtccttgtggacctcctggtcctcgcgggccgcctgga
tgtcctggagagaaagcctgcagaggaccgattggaccaagaggtcaaatcggtatggaa
ggagggaaaggaccgccaggtaaccgcggcccagatggaccaccaggacgaaccgggaac
ccaggaccaaatgggaaggactcgtatatttctgtgtggccggaaccaggagacccaggt
gaagaaggagctctaagccaagtgggaggaatcggattcccgggtttccctggactgagg
ggagctgatggttcaaaaggctcacttggagcaccgggttggacgggaatacctgggcgt
gatggactgagaggagaggatggagagagaggacgaatcggccggaaaggtgcggacggc
gatcgtggcagagcgggagccaagggtcctccaggtgagccaggtgagccaggcggcggg
ccgccgccccggaggaacggcttcctgttcagcagacacagccaggacagcgccgccccg
gcctgcccggcccagtccacgctcatattcagaggatactcgctgctcttcatcaacggc
tacagccgcgctcacggacaggacctgggaacggtcggcagctgcctgcagcgtttcagc
accgctcccttcctgatctgtgaggtcggagaggaatgtcgatacgctgagaggaacgac
ttttcctactggctgtccaacatcaggagcccgccgaaccagaccgacccggaggcggcg
ctggaggccaagatcagcaagtgttcggtgtgtgagtctgaagccaacgtgatcgccatc
cacagccagaccagcgccgtcccgccctgccccgcggactggcagtcgctctggaccgga
ttctcctttgtgatggagaccggtgtaggcgccgagggctcggggcagcctctggtttct
cccggatcctgcctggaaaacttccaaggaatgccgttcatggagtgcagcggcagctcg
gggacctgcaagtacgacaacggcctgtacagctactggctggctgctctggacccggac
aacatgttcaggaggcccagcagctggatccttccagggaacaacccggacaacatcagc
cgctgcagagtctgcatgaagatcatgcagatgtga
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integrated database retrieval system
