Poecilia reticulata (guppy): 103475378
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Entry
103475378 CDS
T05149
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X2
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03440
Homologous recombination
pret03450
Non-homologous end-joining
pret04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103475378 (rad50)
03450 Non-homologous end-joining
103475378 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
103475378 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pret03032
]
103475378 (rad50)
03400 DNA repair and recombination proteins [BR:
pret03400
]
103475378 (rad50)
DNA replication proteins [BR:
pret03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
103475378 (rad50)
DNA repair and recombination proteins [BR:
pret03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
103475378 (rad50)
BRCA1-C complex
103475378 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
103475378 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
zf-met
AAA_29
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
103475378
NCBI-ProteinID:
XP_008425171
UniProt:
A0A3P9NGL3
LinkDB
All DBs
Position
LG14:complement(2558021..2586346)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIQRSMSCTQKAKNYSFKSLEQVITR
IKDGERVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEDSNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRLKQSHTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASKDS
VHQTESQIEPLENRLMEFDQKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DEELQDIYQNHQRTVKEKERRLTDCQRELERAGRECQRLNRVKADLLVEQGRLQLEADRH
TQNVKSRDTLVRSLSSHLEMEGYDRPPFTSLQLESFHRHVTQRLEQEKETLRQITADLQE
KEQQKQQSIDEIRDKKTGLERTVELKRDMQGKKQQELRNIRADLQKLEGSSSRLQELENE
LAKAECELERAVQSSNVEELKTEIEGLQREKTELDRAQRRLDQEMQILNTHTTARTQMDM
LKKDKTEKEEQVRKTKARHGENLTSLLGHFPNKRELEDWIYSKSKEINSTRDKLAKLNKD
LASSEQNKSHIAAELRKKEQQLTSDEEKFFNVCGSQDLEQDLGRLQEDLEKVSKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
KKERKKDEMMALKPVRQAIVQFQEKELPELRNRLQIVNREIERLKAEIEEQETLLGTLLS
EEETAKACLQDISLMDRYLMDLKELDRKIAQQAAKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQXLKSAVNETRAEKLQLSSDMQKQQQLEEQCVDFTAEIQA
LTRDIREAKEQLSPLSAALEKLQQEKQELMEHKRKKQEEGQEKINGIKERVKSVSILERD
IKKYMDDGREEYKEQKESELQETNTQLHEAEKQKDKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKRETLMKDMGNMQVLQLRQERRDAERKLEDLKKNRSIALGRQKG
FEEEILHYRKELREDQYDKAEERYKNKMITMRTTELVIKDLDLYYKALDQTIMRFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIENFYRIRKNQDQNSEINKCSISSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagatagacaaaatgagtatcctcggagtgagaagctttgggattgaggataaa
gacaaacaagtcatctccttttttactcctttgactgttctggtgggacccaacggagca
gggaaaacgacgattattgaatgcctcaagtatgcaacatcgggggaacttccccctgga
tctaaaggaggagcttttgttcatgatccaaaggatgcccatgagacggatgtacgagct
cagattcgtctcctgttctcagacgtgaatggagaaaaagtcaccatccagcgctccatg
tcctgcacacagaaagcaaagaactattcattcaaaagcttagagcaggtcattactaga
ataaaagatggtgaaagagtaagtctttcttctaagtgtggagagctggatcgggagatg
atttctgctttaggagtgtccaagccggtgctgaatcatgtcatcttttgtcaccaagaa
gattccaactggccacttagtgagggcaaagctctcaaagacaaatttgactccatcttt
gctgcaaccaaatatattaaggctctggagacgatgcgtcagctgcgcctcaaacagagt
catacagtcaaagaatgccaagtggagttacgctacctgaagcaaaacaaggagaaggct
cagcagatcagagagactgtggccaccaaggaggctcagctgatggcctccaaagacagt
gtccaccagacggagagccagattgagccgcttgagaatcgactgatggagttcgaccag
aaactggggaaggtgatgaagttggacaatgacattaaggctttggacagcaggaagaaa
cagatggaggaggacaacaaagagctggaggaaaccatggaacaggtgtttcagggttca
gatgaggagctacaagacatttaccagaaccaccagaggacagtgaaagagaaggagcgc
aggttgacagactgccagagagagctggagagagccggccgggaatgtcagagactcaac
agagtgaaggccgatctcttggtcgagcaaggtcgtcttcagctggaagctgatcgccat
actcagaacgtcaagagccgtgacactctggttcgctctttgtcatcccatctggagatg
gagggttatgaccgcccccccttcacttccctgcagcttgaaagctttcatcgtcacgtc
acacaaagactggagcaggagaaagagacactccgtcagattacagcagatctgcaggaa
aaggagcaacagaagcagcagtctatcgatgaaataagggataagaagactggcctggag
agaaccgtagagctgaagagggacatgcagggaaagaagcagcaggagctgaggaacatc
agggcggatctgcagaaactcgaagggtcatccagtcgactgcaagagctggaaaatgaa
ttggccaaagctgagtgtgagctggaacgtgccgttcagagctccaatgtcgaagagctg
aagactgagattgagggactccagagagaaaagacagagcttgaccgggcgcagagacgg
ctcgatcaagagatgcagattcttaacacgcacacaactgcacgcacgcagatggacatg
ttgaagaaagataagacagagaaggaagagcaggtacggaaaaccaaggctcgtcacggc
gagaatctcacgtccctcctgggtcattttcccaacaagagagaactggaagactggatc
tattccaagtccaaggaaatcaatagcacaagggacaaacttgccaaattaaataaagac
ttggcgtcaagtgagcagaacaaaagccatattgctgctgagttgcggaagaaggagcaa
caactwactagygatgaagagaagttcttcaacgtgtgtggcagtcaggatctggagcag
gatctgggcagattgcaggaagatctggagaaagtatccaagcaaagagccatgttagca
ggagccacagcagtgtacactcagttcatcagccagctgacagaggagagggagccctgc
tgccctgtgtgccagcggacctttccttcagaatcggacctgcaggaagttatcagcgac
atgcagtccaaactgcgcctggtgcctgacaaactgaagaacacagagcaggacctgaag
aagaaggagaggaaaaargatgaaatgatggcactcaaacctgtgagacaggccattgta
cagtttcaggagaaggagctgcctgagctgagaaaccgacttcagattgtgaacagagaa
atcgagaggctcaaggctgaaatagaagaacaggagacgctgcttggtaccttactgtct
gaggaggaaacagccaaggcctgcctacaggacatctctctgatggacagatacttgatg
gaccttaaagagctggacagaaaaatagctcagcaggcagctaaactccagggagtagay
ctgaccagaaccattcagcaagtcagtcaagagaaacaagaaacgcagcacaagctggac
accacctctagcaaaatggagctgaaacgtaagctgatccaagaccaacaggaccagatt
cagaycctgaaaagtgccgtaaatgaaacgagagcagagaagctgcagctaagcagcgac
atgcagaaacagcagcagctggaggagcaatgtgttgactttactgcagagattcaggct
ttaaccagagacattagggaagcaaaggaacaactgtcacctctgtctgctgctttggaa
aagctgcaacaagagaaacaagagttaatggagcataaaagaaagaagcaggaagaaggc
caagaraagataaatggcataaaagagagggtgaagtctgtctcaattttggaacgagat
attaaaaaatatatggatgacggaagagaggaatataaagagcaaaaggaatcagagctt
caagaaaccaacactcagctccatgaggctgagaagcagaaagacaaaattaataaggag
atgggaaacatccgtcaggacatagatacccaaaaggtccaagagcgctggttgcaagac
aatctgacactgaggaaacgagttgaggaactgaaggaggttgtagctaaacgagaaact
cttatgaaagacatgggcaacatgcaggtgttgcagctgcgccaagaacgtcgtgatgca
gagcgcaagctagaagatttgaagaagaaccggagcatcgcactaggtcggcagaaaggc
ttcgaagaagagattctgcattacagaaaagagttgagagaagatcagtatgacaaagct
gaggagcgctacaaaaacaagatgatcaccatgaggaccactgagttggtcattaaagac
cttgatctctactacaaagcccttgatcaaaccatcatgaggttccacagtatgaagatg
gatgagatcaataaaattatcagagacctgtggcgcagcacctacaggggtcaagatatt
gagtatgtggagatcaggtcggatgtggatgagaattcatcagctggagtcaagaggagg
gtttacaactacagagtagttatggtgaaaggagacacagctctggatatgagaggacgc
tgcagtgctggccagaaggtgttggcgtccctgatcatccgtcttgccctggcagagact
ttctgtctgaactgtgggatcttggccttggatgagccaaccaccaacctggacagagag
aacatcgagtccttggcacatgcccttgtagaaatcatcaagagtcgttctcgtcagcgc
aatttccagctgctcatcatcacccatgatgaagactttgtggagctcctgggccgctcc
agctacatcgagaacttctaccgaatccgcaagaaccaggaccagaactccgaaatcaac
aagtgcagcatctcctctctctcgtcttatcttcattaa
DBGET
integrated database retrieval system
