Poecilia reticulata (guppy): 103476785
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Entry
103476785 CDS
T05149
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103476785
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103476785
NCBI-ProteinID:
XP_008427588
UniProt:
A0A3P9PCM2
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Position
LG15:complement(13713166..13740562)
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AA seq
1813 aa
AA seq
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MDELTRQMEISGEKVLTETVTSTTRLASLPPKGTSGSNHRNMSSGAGGLGFEKNVLTQNS
SGTYFSSSSIGVTSNYSSSSGIYLGGDSSGGGEGGGSYIDGEGYGSGGGGGGRGGSSGST
YLVSSVSKVRSSSSGGARRAQTGGSSVGLSPGFRERKTIASRSGGYDGSSSGNSSPEFSR
KDYGNYCSGATRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRSSA
SVTLPVPKKASVETKTVSVATQSASTLFEPVVQTNGFHTIDVSGLYDSRLTSRQRDSGVQ
TGQHTVTVKSCHCDAGVKSSQYDVSLSSGQYDTGLKSSQYDVCLSSGQYDTGLKSGRYDM
SLKSGQYDTAGRSGQYDTLDSAFPTFSWSTSTLPSSTTVVAGNTSSYTYQLGQVSANNMS
GGSPPLSPIQQQSLSVYGFQNNLAPTSIGVLTTSGGNVTANLGGYGVQKNVSNGSAVMSS
GISTATRSQTDDVYKRDYRYMASEKENVPARREGEMLILAKDSGKQFTTTTSSTHIAGGS
LSGDSIKKEKLISSYVDTGILKAETGNSYYGSSGVLMKDKATYAEIRRDSGIFGGGGLCC
CSDSCCSWWKWLLGLLLLCLLLLGLLFGLIALAEDVRKLKKRVSTLETEVSVANAHTSRL
SGPSNDINTYVSGAGGGGGGGTGTDNTLVHGFGGAGGGGSSDSKMQIIIAGAGAGGGAGG
SASRNDVDVGVVGAGGAGGAVGAGSSSSSSSGTSFSGSAGSAGTSFSDGVSAGSAGFGGG
TGTGSSGTSFGGGTGSSGTGFVIGTGVGTNGGVGGGTAVSGRYIDSAFLQLAIHQMLRSE
MQSQAFRGFLASSVQGERGLPGPKGDSGLKGESGFPGIPGAPGPMGHAGPEGPKGQKGSQ
GEHGMEGPPGIRGREGPPGPRGDLGPAGLGLKGDKGEAGSVGPAGAPGQKGAQGIQGLHG
SPGPQGFRGEAGLPGPKGDRGLAGFQGLKGETGEKGVRGLQGEPGLPGPAGEKGSKGSMG
LSGQDGEKGSRGDQGPPGPPGLRGPAGPPGDAGLPGTPGLQGPPGIPGNPGQPGAKGEPG
QAGRIINAAGSTSVGIPGPPGPAGPPGPAGPPGLSGPIGPAGLPGPPGPKGDRGYKGEQG
ETGTTRETIYSSTAERQFGAGGSSSFHGIPGPPGPPGPPGRPGDSRQGPPGPPGPPGYGI
PGPKGEKGDVGFTSSSGTYYSGPPGPPGQPGPKGATGSPGPRGYTGEQGPPGVPGTPGRA
GSSVAYGGNVVPGPPGPPGLPGLPGVKGDTGAPGIPGASRGSVSVTSGPAGPPGPPGPPG
LPGSFSSSTEMRQYISDYLSRYRLSSLPGPPGPPGPPGLPGTFSGSIDDISTRIIAYLRR
SDSGFTIGVQGPPGPPGPPGPASGSLTVSALIAMLQRDDVRRYMSGPPGPQGPPGPPGAS
GGLSGTYRIEEVATYIFNIMNERGIARGPPGPRGLPGPPGAPGAGGSGFTTATIDYSALI
RNSDFRSWITSAVQQGPPGPPGAPGLPGSPGPQGPPGVSTATVYGSGGRGYSLEEIQRYL
QGSGFRGLPGPPGPPGPQGPPGAVTGSVTYSGNFPRESIRAEIQQYLSSDNVRRTIVGPP
GPQGPKGQKGDRGEPGYSQSYIQSQSYQQQSDGRYGSQHRDVDVSRLTEALDYSNVAVKV
TDYIKNQGLLQQYISDGSWRTNVRAIQGPPGPPGPPGPPGYSRVIGSYGNVTDDLMDFFR
RHGTVPGPPGSPGTKGERGYPGPKGDKGDPGPPGLPGIPAPLTVQIPHKVQKREAGDKVA
VRRKRRRSQAGFG
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaaggcagatggagatctcgggagaaaaggttctgacagaaaccgta
acctccaccacccgactggcttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcggtgccggagggctgggttttgagaagaatgtcttaacgcagaacagc
agtggaacctacttctcctcatcctctataggcgtgacgagtaactacagctcctcctca
ggaatctacctgggaggagattcctctggaggaggtgaaggtggcggaagctacatcgat
ggagagggctatgggagcggaggaggaggaggagggagaggaggaagcagtggaagcact
tatcttgtgagctccgtgtcaaaggttcggtccagctcgtcgggcggtgccaggagagct
cagactggggggtcatcagtggggctgtcgccaggtttcagagagaggaagaccatagca
agccgctcgggaggctacgacgggagttccagtggtaattcctccccagaattttcacgc
aaagactatgggaactactgctccggcgccacaagagggaggagtgaaagcagagagagc
gagatcagagccagattacaaagtgcctccccatctgccggaagatgggcagagttggaa
gatgtgaagaagctgctgaagggacgctccagcagcgtcagtccgacccgctcctccgcc
tcagtcaccctgccagtacctaaaaaagccagcgtggagaccaagaccgtctcagtggcc
actcagtcagcttcgactctgtttgaacctgtagttcagacgaatgggttccacactatc
gacgtgtcgggcctctacgacagcagactgacgtccaggcagcgcgactctggcgtccaa
acaggccaacacactgtcacagtaaagtcatgccactgtgacgctggagtcaaatccagc
cagtatgatgttagcctgagttcaggtcagtacgatactggtctgaagtcaagccagtat
gacgtttgcctgagctcaggtcagtacgataccggtctgaaatctggacgatatgacatg
agtctgaaatcgggtcagtacgacaccgctgggagatcaggccaatacgacaccctggat
tcagcctttcccactttctcctggtccacctccacgctgccctcctccacgaccgtcgtc
gctggcaacaccagcagctacacctaccagctcggtcaggtcagcgccaacaacatgtcg
ggaggctccccgccgctcagccccatccaacagcaatctctatcagtttatggttttcag
aataatctggctcccacctctatcggtgtgctcaccaccagcggcggcaacgtaaccgct
aacctgggagggtatggcgtccagaagaacgtgtcaaacggcagtgctgtcatgagctca
gggatctctacagccaccaggtcccaaaccgatgatgtctacaaaagagactacagatat
atggcctctgaaaaggagaacgttcctgccaggagggagggagaaatgctcattctggca
aaagacagtggcaagcagtttaccaccaccaccagcagcactcatatagcaggaggttca
ctttcaggagactcaataaagaaggagaagcttatttccagctacgttgacacgggcatt
ctgaaagcagagacaggcaattcatactatggatcatctggagtcctgatgaaagacaag
gcaacctatgcagagatccgcagagacagcggcatctttgggggaggaggactgtgctgc
tgctccgactcctgctgctcctggtggaagtggctgctgggcttgctgctcctctgcctg
cttctgctcgggctcctgtttggcctcattgcattggccgaggacgtgaggaagctcaag
aagcgagtgtcgactctggagaccgaggtctcagtcgccaatgctcacactagtcggctg
tcaggtccttccaatgacatcaacacctatgtgagcggtgcaggtggaggtggaggggga
ggcaccggcaccgacaacacactcgtccatggattcggaggtgcaggtggaggtggaagc
tcggactccaaaatgcaaatcattattgctggtgctggtgctggtggtggtgcaggcgga
tctgccagtcggaatgatgttgatgtcggcgttgtgggtgccggtggtgctggaggggct
gtgggagctggatctagctccagtagcagctctggtaccagtttcagtgggagcgccggc
agtgctggtaccagtttcagtgacggtgtcagtgcaggcagtgccggtttcggtggcggc
accggcaccggcagttccggtaccagttttggcggcggcaccggcagttccggtaccggt
tttgtcattggcaccggtgttgggaccaacggtggtgtcggcggtgggactgcagtgagt
ggaagatacatcgatagcgccttccttcaattggccatccatcaaatgttgaggtcagaa
atgcagtcacaggcattcagaggcttcctggcatcctcagtgcagggagagaggggatta
cctggacctaaaggggactctggattgaaaggggaatctggtttccctggaattccaggc
gcaccaggtccaatgggacatgctggtcctgagggtcccaaaggacagaaaggaagccaa
ggtgagcatggaatggaagggccaccgggtatcaggggccgcgaaggaccacctgggcct
agaggcgacctaggacctgcaggcttaggactcaaaggggataaaggtgaagctggatct
gttggacctgctggggcccctggacaaaaaggtgcacaaggaatccaagggttacacggg
tcgcctggtcctcagggtttccgtggtgaggcgggactacctggaccaaaaggtgataga
gggcttgctggattccaaggactcaaaggtgaaacaggtgaaaagggagtcagaggtctg
caaggggaacctggcttaccaggaccagcaggagagaaaggctccaaaggatccatggga
ctttctggacaagatggtgaaaagggatcaagaggtgaccagggaccgcctggaccgccg
ggactcaggggccctgctgggcctcctggagatgctggacttccaggaactccagggctt
caaggaccaccaggaattccaggaaatcccggtcaaccaggagccaaaggtgaacccggt
caagctggacgaatcatcaacgcagccggctctacttctgttggcattccagggccacct
ggacctgctgggcccccgggtcccgctggtcctccgggactatcaggtcccattggccct
gctggtctgcctggcccacctggtcctaaaggtgacagaggatataagggagagcaggga
gagactggaacaaccagggaaaccatatattcatctacagcagagaggcagtttggtgct
ggaggaagctcctctttccatggcatacctgggccaccgggtccacctgggcctcccgga
cgtccaggcgactcgagacaaggacctccaggaccaccagggccgccaggttatgggata
ccaggacctaaaggagaaaagggagatgtgggtttcacatccagctccggaacatattat
tctggaccgccaggacctcctggacagcctggacccaaaggagcaacaggctctcccgga
ccccgcggatacacaggtgagcaaggcccaccgggcgtgcctgggacaccaggaagagca
ggaagctccgttgcgtatggaggaaacgtggttcctggaccaccggggcctcctggtctc
ccagggttacctggagtgaagggagacactggagctccaggaattccaggcgcatcaaga
ggttcagtctcagtcacctcgggccctgctgggcccccaggacccccaggacctcctggc
ctcccgggttccttctcttcctccacagagatgcggcagtacatttcagactacctgagt
agatacagactgagcagtttacctggccctccaggtccacccgggcctccaggactccca
ggaaccttctcagggtctatagacgacatctctactcgcatcattgcatacctgcgacgc
tcagactcgggcttcactatcggggttcagggacctccaggaccgcctggtcctcctggg
cccgcctctggctccctgactgtcagcgctctcattgccatgcttcagagagatgacgtg
agaagatatatgtctggaccacctgggcctcaaggacctcccggacccccaggggcctca
ggaggactctccggcacttacagaatagaggaggtagccacatatatcttcaatatcatg
aacgagagggggattgcgaggggcccgccaggtccacgaggtctaccgggcccccccgga
gccccaggcgcaggaggctctggcttcaccactgctaccatcgactactcggctctgatc
cgaaattcagatttccgctcctggatcacttccgctgtgcagcaaggtcctcctggtcct
ccaggtgccccagggctgcctgggtctcctggtcctcaggggcccccaggggtctccacg
gcaacggtgtacggatcgggaggtcgtggctacagcttggaggaaattcaacgctacctg
cagggttctggattcagaggtctccctggacccccgggccctccaggtccccagggtcca
ccgggcgctgtcaccggatcagtgacctacagtggaaatttccctcgagagagcatccgc
gctgaaattcaacagtatctgtctagcgacaacgttcgacgtaccattgttgggcctcca
ggtcctcaaggtccgaagggtcagaagggagatcgcggagagcctggctactcccagagc
tacattcagagccagagctaccaacaacagagcgacggtcgctacggctcccagcacaga
gacgtggatgtcagcaggctcaccgaggcgctcgactactccaacgtcgccgtgaaagtt
acagactacattaagaatcaaggcttgctgcagcagtacatctcagacggctcatggagg
acaaacgtccgagcaattcaaggacccccaggtcctccggggcctccaggaccgcccggc
tacagccgtgtgattggctcctacggcaacgtcacagatgacctcatggacttcttcagg
agacacggcaccgttcccggcccgccaggaagcccaggtacaaagggagagagagggtac
ccaggacccaaaggagacaagggtgatccgggacctccaggtttacctggaatcccagcg
cccctcaccgtccagattccacacaaagtgcaaaagagagaagcaggcgataaagtggcg
gttcgtcgaaagcgtcgtcgatctcaagccggcttcggctga
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