Poecilia reticulata (guppy): 103477657
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Entry
103477657 CDS
T05149
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103477657 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pret03021
]
103477657 (smarcc1)
03036 Chromosome and associated proteins [BR:
pret03036
]
103477657 (smarcc1)
Transcription machinery [BR:
pret03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103477657 (smarcc1)
Chromosome and associated proteins [BR:
pret03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103477657 (smarcc1)
PBAF complex
103477657 (smarcc1)
GBAF(ncBAF) complex
103477657 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
103477657
NCBI-ProteinID:
XP_008429132
LinkDB
All DBs
Position
LG16:complement(4773968..4796848)
Genome browser
AA seq
1140 aa
AA seq
DB search
MATSATTAGGTGSGGGAAGLVGGGTAVARKKDGGPSTKFWESSETISQLESVRIWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPPLTKLPAKCFLDFKAGGTLCHILG
SVYKYKSEQGWRRFDLQNPSRMDRNVEMFLNVEKHLVQNNCLTRPLVYLSPEIEQKQVSK
LKDIIKRHQGSVTEDKSKATHHIHPSLTQQEDEDWLRPVMRKDKQVLVHWGFYPDSYDTW
VSAGEVDADVEDPPSSEKPWKVHAKWVLDTDAFNEWMNEEDYELDENKKPVSFRQRIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEDGVSKNANSKKDSENTPVKGGNMADLDDMEDDSVLSGGKDD
DEQGKGEVNRMDAGEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTP
EIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAESR
PLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPPQPMPNFADKSKDKPIDLQNFGLRPD
LYKKSAKQGKGAGTTREWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLRLP
IEDPYLESTETSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRV
REEVPAELVEAHVKKVQEAARSTGKVDPTFGLESSGIAGTAPEEPEKTETAEPEKMETDS
DSQQADKAEMKDEAEKPSESAEKSDKTESMEKVKKEGAEGSEHEQEKEEEGETKTASADK
DKDETMDTSSSDQEKEKEEKTATEEGEEKQKKLEHDIGEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQAAAAAAAAAAAQAQGQGSGPGPHPGPPPHGMHHGGPPPHHGGP
PPAHHGGPPPHHGGPPPLHGGPPPGAAMHPGFPPMGHHPMAPHHPGQTGPMEPGQPMPGR
MLSGPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPPPAQPEAMPPAPVAPPAPPSGRVSDN
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtcggcgacaacagcaggcgggacgggctcaggcggaggagccgcgggtctg
gtcggcggcggaacggctgtagcccgaaagaaagacggcggaccttctacgaaattttgg
gaaagttcggaaacgatttctcagcttgagtcggtgcgaatttggatcggaaagcactac
aagaagtatgtccagaatgactctccctccagtaagtccctggctggcctggtggtccaa
ctgcttcagtttcaagaggatgcgtttggacgcagggtcaacaatcctcctcttaccaag
ctacctgccaaatgtttccttgatttcaaggcaggaggaactctctgtcacatcttggga
tcagtatacaagtataaaagtgagcagggctggaggagatttgacctgcagaatccgtct
cggatggaccggaatgtggaaatgttcctgaatgttgaaaaacacctggtccagaataac
tgcctgacacggcccctcgtctacttgtcgccagaaattgagcagaagcaagtcagcaaa
ctcaaagacatcatcaagaggcaccagggttcggtcactgaggacaagtcaaaggcaact
catcacattcacccatctttgacacagcaggaagacgaggattggctgcgtccggtcatg
aggaaggacaagcaggtcctcgttcactggggcttctaccccgacagctatgacacctgg
gtatccgccggtgaggtggatgctgatgtggaagatcctcccagctctgagaaaccctgg
aaggttcacgccaagtgggttttagacacagatgcattcaatgagtggatgaatgaggaa
gactatgagctggacgagaacaaaaagcctgtcagcttccgacagagaatcttccccaaa
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggcaaactctgcgggcaag
aagaggaggcgctcgccctcgccgcccagcacaccagctgagtctcgaaaaaaaggagga
aagaaggggaacccagggcctcactggaagcgacggggacacagaggagaggaagaggac
actgaggaggacatgacgaaggacatggatgactcctctgccggcgccagcatggaggat
ggtgtgtccaagaatgctaattcaaaaaaagacagtgaaaatactccagtcaagggaggg
aatatggcagatttggatgacatggaggatgattcggtgctgtccggtggcaaggatgat
gatgaacaaggcaaaggagaagtcaatcggatggatgctggagaggacaatgtaactgag
cagacgcatcacatcatcattcccagttatgctgcctggttcgactacaacagcatccat
gagattgagaggagagctcttccagagttctttaatgggaagaacaaatccaaaactcca
gaaatatacctggcctatcgtaacttcatgatcgacacgtatcggctgaaccctcaggag
tacctgacctccacttcctgtcgcagaaacctgactggggacgtctgtgccatcatgagg
gttcatgcattcctggagcagtggggtttggtaaattaccaggtggatgccgagagtcgg
ccgttacccatgggcccccctcccacgccccacttcactgtgctggctgacactccctct
ggcctcatgcccctcaaccaccggcctccacctattcctcctcctcagccaatgcccaac
ttcgcagataagtccaaagacaaaccgattgacttgcagaactttgggctccgccctgac
ctctacaagaaaagcgccaaacagggaaagggagccggtaccaccagagaatggaccgag
caagagactctactgctgcttgaggccctggaaatgttcaaagacgactggaacaaagtg
tcagagcatgttggttcacgcacccaagatgaatgtatcctgcacttcctgcggctgccc
attgaggatccgtacctggagagcacagaaacgtctctgggccctctggcctaccagccc
attcccttcagccagtccggaaacccagtaatgagcacagtcgccttcctggcctctgtg
gtggatcccagagtggcgtctgctgcagccaaggcggctttagaggagttttctcgcgtg
cgggaggaagttcctgccgagttggtggaagctcacgtgaagaaggtccaggaggcagca
aggagcaccggcaaggtggaccccaccttcggcctggagagcagcggcatcgcaggaacc
gcgccagaggagcccgaaaaaacagaaaccgcagaaccagaaaagatggaaacagattcg
gactcccaacaggctgataaggccgagatgaaggacgaggcagaaaagcccagtgagtcg
gcagagaaaagcgacaagacggagagcatggaaaaggtgaagaaggagggagcagaggga
tcagagcatgaacaggagaaggaggaagaaggagagactaaaacagcttcagcagataaa
gataaggatgaaactatggacacctcgtcttcagatcaagagaaggagaaagaggagaag
acggctaccgaggagggagaggaaaagcagaagaagttggagcatgacatcggagaggga
aacatcgccacagcggccgctgctgctctcgcttctgcagccaccaaagccaagcacttg
gcggcggttgaagaaaggaaaattaagtccctggttgctctgctggtggaaacccagatg
aagaagttggaaatcaagctgaggcacttcgaagagctggagaccatcatggaccgcgaa
aaggaagctctggagcttcagcggcagcagctcctcaccgagcgccaggcgtttcacatg
gagcagctgaaatacgccgagatgaaggccagacaacagatggagcagcaagccgctgcc
gctgctgctgccgccgccgccgcccaggctcaaggtcagggctctggacccggaccccac
cccggcccccctccacacggtatgcatcacggcggacccccgccccaccacggcggacct
cctcctgctcaccatggaggaccaccgccccaccacggcgggcctccccccctccatgga
ggaccgccaccaggtgctgcaatgcatcctgggttccctcctatgggccaccaccccatg
gccccccaccacccaggacagacaggaccgatggaaccgggtcagcccatgccaggacgg
atgctgtctggtccgccctctgccggaccgccaccagggggcatgccgcccatgatgccc
ccacgtcaccctggagcccccaatggcatgtatcctggccctccacctgcacaaccagag
gcgatgcctccagctcccgtggctcctccagcgcccccaagtggccgggtgtctgacaat
taa
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integrated database retrieval system
