Poecilia reticulata (guppy): 103479402
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Entry
103479402 CDS
T05149
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
pret04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103479402
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103479402
09142 Cell motility
04820 Cytoskeleton in muscle cells
103479402
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pret04147
]
103479402
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103479402
Exosome [BR:
pret04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103479402
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103479402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103479402
NCBI-ProteinID:
XP_008432024
UniProt:
A0A3P9PUP8
LinkDB
All DBs
Position
LG17:complement(14196436..14220515)
Genome browser
AA seq
1673 aa
AA seq
DB search
MAFKVTFMMIFTSWWFIFLVIXVQLLKAGKIEGPCQGRDCSQCVCQPAKGARGPPGKPGR
QGIQGPMGQRGRIGPQGEKGTVGAAGSHGLQGPKGDRGLTGVPGFTGHEGFPGHPGAGGE
PGLPGLDGCNGTRGHPGPDGLPGLDGLHGPPGPKGAKGSKGTPNYTGALPGPPGEKGSDG
DHGQTGSPGNIGPKGLRGRHGLRGPQGVEGPKGVKGSPGDPGRSPRGEIGEQGPPGPPGP
PGPEEQKGYPSEYFFHKGEKGNKGXHGPCGPKGRRGVGGDIYSPSQTGPKGEKGILGFPG
DRGSPGRSGGDGLTGQEGVPGDKGLPGLIGRIGEKGWPGDPGPPGFSQFHDGNTVRGPKG
DRGYPGAPGFPGEPGYMGIPGPPGLPGLPDAHGRPGQPGDPGEKGQKGEPGTYDPNEILF
IRGPKGVKGHQGERGPDGCPGPQGCGNYYCEPGSLGEPGEDGPRGFSGNKGLKGVKGCPG
ECKCVHALRAVGPPGPPGYPGSPGFPGAPGPKGEPGLRGKDGPRGPDGVHGFTGLKGRKG
EKGDTYVRGTKGAKGDQGEPGYAGPPGRTGELGKDGFPGPVGEPGPPSSGYVGRPGPKGY
PGPPGPKGFPGPLGPPGPGFPDLKGVPGLQGNQGLPGLPGIPGRPGPPGETEPCCHEGQI
GPPGPKGEPGLPGVQGQLGRDGYPGTPGQQGPKGIKGDDGETLTGPPGSIGANGDPGDHG
PTGISLDGPGGLPGIPGPHGRKGDPGHILSAWPGPVGPPGPQGAVGSYGIPGIPGHPGSP
GLQGPPGPQGRKGDPGDSGDLGXTGVXGPPCTVCELVGPPGPPGPSGRRGEQGVPGLPGQ
KGVKGDIGAPGRGQKGLQGNPGIXGAPGPAGPIGLVGPQGDPGIHGFQGQKGEKGLPGKP
GSRSIPGNPGPPGQPGEKGGRGFPGRYGNTGDPGFPGNKGSPGPXGLPGLCSIVNVTKGP
SGFSGRRGPPGQTGFAGYKGSTGTPGDLGPDGWPGSQGLKGFAGIPGREGLSGLRGLHGI
KGFPGPRGYSGNTGDQGDPGPPGQIGIPGLPGFPGVKGNKGQSYGRPGPQGLKGLPGEXG
PSAHTGSPGHPGDPGPRGRQGQPGRPGGTGETGRQGGPGYPGSRGLPGRQGIRGPPGDDG
VVGPPGPHGPWGNPGPPGTPGLDGLNGLRGPKGMKGADGQGTFGPLGQKGLPGAKGTQGI
SGPAGATIPGVKGQTGAPGNTGFPGIPGTPGSSGKTCQNPLHGPHGDRGYEGLPGPSGPP
GPPGPPGGSISYKGDKGPDGHRGPPGHRGNKGVPGPPGPHGRSGTPGPKGEKGPDGPRGP
LGPRGQQGIPGPQGCKGEIGPIGDPGVKGQPGDLITVDLRVPPPGAPGPKGVSGSEGSQG
YVGRPGPFGRTGQKGPKGSVGFPGTPGPPGLDGPSGDPGDVGEQGYTGPQGAPGPPGDPG
EPGHRRRLRSAFLLVIHSQSVLAPQCPAGSNQLWVGYSLIYLEGQEKAHTQDLGQPGSCL
PIFSTMPFSYCDKDACYYSSRNDKSYWLSTTAPIPMMPLFGQEISFHISRCVVCETFSPA
VPFHSQDQAIPPCPDGWKSLWTGYSFLLHTGAGDEGGGQSLASSGSCLRDFRTHPFIECQ
GAQGSCHYFSNLYSFWLTTVRDREEFVPVKPGTIKAADQQRYKASRCNVCLRD
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaaagtaactttcatgatgatttttacctcctggtggttcattttcctggtc
atcsatgtgcagctgctcaaagcaggtaaaattgaaggcccatgtcaaggcagagactgc
tctcagtgtgtgtgtcagcctgctaaaggtgcaaggggacctccagggaaaccaggaagg
caaggtattcaaggtccaatgggacaacgaggacgaattgggcctcaaggggagaaggga
acagtgggcgcagcaggatcacatggcctacaggggccaaaaggagaccgtggtttgact
ggtgttcctggtttcacgggtcatgaaggatttccaggccaccctggagcagggggtgag
cctggtttaccgggactggatggctgtaatggaacaagaggtcatccaggaccggatggt
ctgcctggacttgatggcctccatgggccacctggaccaaagggtgctaagggaagcaaa
ggaacacctaattacactggtgctcttccaggtcctcctggtgaaaaaggtagcgatgga
gaccatggtcaaacaggaagcccagggaacattgggcctaagggtctccgtggccgtcac
ggacttcgtgggcctcagggtgtagagggtcctaaaggtgtgaaaggatcacctggtgac
cctggaagatcgcctagaggtgaaattggtgaacaaggcccacctggaccacctggccct
cctggaccagaagaacagaaaggatatccttcagaatactttttccataagggtgagaag
gggaataaaggccmgcayggaccatgtggaccaaaggggcgtcgaggtgttggaggagac
atctacagccctagtcaaacaggacctaaaggagagaagggaatcctgggatttccaggg
gataggggtagtcctggacggtctggtggagacggattgactggacaagagggtgtccct
ggagacaaaggacttccagggctcattggaagaataggagaaaagggttggccaggggat
ccaggtccccctggtttttcacaatttcatgatggaaatactgtgagaggtcctaaagga
gaccgtgggtatccaggtgcacctgggttcccgggagagcctgggtatatgggtatacca
ggccctccaggyytaccaggtttaccagatgcacatggccgacctggtcaaccgggtgac
cctggtgaaaagggtcagaagggagaaccagggacatacgatccaaatgaaatacttttc
attcggggaccaaagggagtaaaagggcatcaaggagaaagaggccccgatggatgccct
ggtccacaaggatgtggaaattattactgcgagcctggttctctaggggaacctggtgaa
gatggacccagaggattttctggaaacaaaggcctaaaaggagttaaaggttgtccaggg
gaatgtaaatgtgtgcatgctctgagggctgttgggccacctggtccacctggttatcca
ggatctccaggatttccaggagctccgggacctaagggggagcctggactgaggggtaaa
gatggcccaagaggaccagatggcgtacatggtttcacgggtctaaaaggaagaaagggt
gagaaaggtgacacgtatgtgaggggaactaaaggtgcaaaaggggaccaaggagaacca
ggatacgctggtcctccaggaagaacaggtgagcttggaaaagatggcttccctggtccg
gtgggagaacctggtccaccaagttctggctatgtgggacgtcctggacccaaaggttat
ccgggccctccggggcccaaaggattccctggtccccttggtcccccaggtcctggattt
cctgacctaaagggagtacctggacttcaagggaatcagggacttccagggcttcctgga
atcccaggacgaccaggtccaccaggtgaaacagaaccatgttgtcatgaaggtcaaatt
ggaccaccagggcctaagggtgagccaggtttaccaggtgttcaaggtcagcttggaaga
gatggatatccaggaactccaggacaacaaggacctaaaggtataaagggagatgatgga
gaaactctgaccggaccaccaggatctattggtgcaaatggagatccaggtgaccatggt
ccyactggtattagcctggatggccctggaggtcttcctgggataccaggaccccatggc
agaaaaggagacccaggacacatcctttcagcttggccaggtccagttggtcctcctgga
ccacaaggagctgtggggtcatacggaattccaggaatccctggacatccaggatcacca
ggattacaaggcccaccaggaccccaaggtcgcaagggagatcctggggacagtggagac
cttggagawactggtgtcyctggtccaccgtgtactgtttgtgaactggtaggtccgcct
ggacctccagggccttcagggcgccgtggtgaacaaggagtgccaggcctccctggtcag
aaaggtgtgaagggagatattggtgcacctggtcgaggacagaagggtttacaaggtaat
ccwggtattycyggggctcctggcccagctggaccaatagggcttgttggtcctcaagga
gatcctggtattcatggcttccaaggacagaaaggtgagaagggcttgcctgggaagcct
gggtctagaagtatacctggcaatcctgggcctccaggacaaccaggtgaaaagggagga
agaggttttcctggtcgttatggaaatacaggtgatccaggatttcctggtaacaaaggc
tcacctggacccamtggactcccaggattatgttcaattgtcaacgtgacaaaaggtcct
tctggattttccggaagaagggggcctcctggtcagacagggtttgcaggatacaaaggc
agcacaggcacgcctggtgatttgggtcctgatggatggccaggatcacaaggattaaaa
ggatttgctggtattccaggtagagaaggattatcaggactccgtggacttcatgggatt
aaagggttcccaggtccaagggggtattctgggaatactggagatcagggagatcctgga
cccccaggacaaattggtatccccggcctcccgggatttcctggtgtraaaggtaataaa
gggcaatcctatgggagacctggcccacaaggactcaaaggattacctggcgagrttggg
cccagtgcacatacaggaagtccagggcatccaggtgacccaggacccaggggaaggcaa
gggcaacctggacgtccaggggggactggggaaactggaagacaaggagggccaggctat
cctgggtcccgaggtctaccagggcgtcaaggcattagaggtcctccaggtgacgatgga
gttgtgggaccacccggcccccatggcccatggggcaatccaggtccccctggaactcca
ggtctggatggattgaatgggctaagaggtccgaaagggatgaagggagcagatggccaa
ggcacttttggacctcttggacaaaaaggtttacctggagccaaaggcacccagggcatc
tcggggccagcgggggcaactattccaggggttaaaggtcaaaccggggcacctgggaac
acaggttttccaggaataccaggaacacctggtagctctggcaaaacctgccaaaacccc
cttcatggacctcacggcgacagaggctatgaagggctcccaggaccctcaggtcctcct
ggtccacctggtccaccaggtggcagcatttcatacaaaggagacaagggaccagatggc
catcgtggaccaccaggtcataggggaaataaaggcgttccaggacctccagggcctcat
ggccgcagtggcactccaggaccaaagggtgagaaaggtcctgatgggccaaggggccct
ctgggacccagaggtcaacagggcatccctggacctcaaggttgtaagggagaaattggc
ccaattggagatccaggtgtcaaaggtcaacctggtgatttaatcactgtagatttaagg
gttccgccccctggagccccaggaccaaaaggcgtttcaggaagtgaaggaagtcaaggg
tatgtaggtcgtcctggtccttttggtcgaacaggacaaaagggtcctaaagggtctgtg
ggctttcccggcacaccagggcctcctgggttagatggtcccagtggagacccaggcgat
gttggtgagcaaggatacactgggcctcaaggtgcccctggtcctcctggagatccaggc
gagcctggccatagaaggcgacttagatcagcctttcttttggttatccacagccagtca
gttttggcaccacagtgtcctgcaggtagcaaccagctgtgggtgggatacagtctcatc
tacctggaaggacaagagaaggctcacacacaagatctgggtcagcctggctcttgtctc
cccattttctccaccatgcctttctcctactgcgacaaagacgcatgctactactcaagt
cgcaatgacaaatcctactggctttccactactgctcctataccaatgatgccactcttt
ggccaggagataagcttccacatcagccgctgtgttgtgtgtgagaccttttcrccagca
gtgccatttcacagtcaagaccaagcaattcctccctgcccagatggctggaagagttta
tggacrggatactctttccttctgcacacaggagcaggtgatgagggtggtggacaatcg
ttggcttcctctggtagctgcctcagagattttcgaactcatcccttcattgagtgtcaa
ggtgcgcagggttcctgtcactacttttccaatctttacagtttttggctaactactgta
agagatagagaggaattcgtccctgtaaagcctggtaccatcaaagcagctgatcagcag
cggtacaaggccagtcggtgtaatgtttgccttcgggattaa
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