Poecilia reticulata (guppy): 103479410
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Entry
103479410 CDS
T05149
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pret
Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pret03000
]
103479410 (rc3h1)
04121 Ubiquitin system [BR:
pret04121
]
103479410 (rc3h1)
Transcription factors [BR:
pret03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
103479410 (rc3h1)
Ubiquitin system [BR:
pret04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103479410 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
Prok-RING_4
zf-CCCH_4
FYVE
zf-CCCH_UNK
zf_CCCH_4
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
103479410
NCBI-ProteinID:
XP_008432035
UniProt:
A0A3P9PVJ9
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All DBs
Position
LG17:complement(14319188..14337028)
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AA seq
1119 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDTQNYEVARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRMAGRSGVVFPDDGLTPDVTVTRKHSPVT
NGSGAPNLPQLVARGTDTVPYELLSKPAKMDGGSPSVPGSPPDVLDPMPKSGIPLPPHAM
AHPRIPADHLTGVKHIPGVARGSPVYPQPQPRDVYDIRPPPASQYEPPQYPGGYPYQQPT
QYVREYIRNPPPPSESGPPYHDPYSGYSAPDRPYPSQHSGPPFPYSHPSHYDRGHHGAYS
APPPPPQPYPSQRDPLDVPPPSAGQANSLYHQEVSSRDRYAPDGYYPPGSQPPPMRTYVR
GSQYSGSQPSLDYLHRRRQELLSQLAERKVISPPPFAASPTLSHPFPSDYPPEYGDESSK
TMKCREPDYAGQYSPWSCETIGSYINSKDAKPKNVMAPGTMEMMNVDDKGQREPSLEAPR
RGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMAATLQNPNSKHMTMPDY
SYGSHGGWVGASYPSHQTASSAQGHFERLPMTTPDREQLKIELQQVNQQITQQTQMHNIE
AASNSLLLQREASALVVQPVQPSQGPAAVVPQQPQPKWXVGGAGVSAVSNEQLSLELHQV
EREIGKRTREMALENQVAHDVQQYKMQPAENGQPEHENQLEEISLALGEVSNGSSSLQEN
AVGGSMLSLTNKTAALSMCSDPVVAGSEMQKNGVVHSCS
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagcgccacaatggacagagtttctgctgtgcccaatctgcacacagacc
tttgaagagactgttcgccggcccatcagcttgggctgtggacatactgtgtgcaagatg
tgcctgaacaagttgcaccgcaaggcctgtccctttgaccagacggccatcagcacagac
atcgagcagttacctgtgaacacagccctgttgcagctggtgggaggccaggttcccaag
gctcagccggttgccttgattacaagtccggaggacactcagaactatgaggtggctaga
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacacccgaggtgtgggt
ctgagcagcacagcccaaagcatgctgagtcgacccatgcagaggaaattggtaactctg
gtccactgccagctggtggaggaggagggacgggtcagagccatgagagcggcgcgctct
cttggcgagcgaactgtcaccgaactcatcttgcagcaccagaatccccagcagctgtcc
tctaatctgtgggccgctgttcgtgcacggggctgtcagtttcttggcccagcaatgcag
gaggaagccctgaagttggttctcctcgctttggaagatggttctgctttgtccagaaaa
gtgttggttctttttgtagtccaaaggcttgaaccacgcttccctcaggcctcgaaaacc
agcataggccatgtggtacagctgctttatagagcttcctgcttcaaggtaaccaaacgg
gatgaagactcatctctcatgcagctgaaagaggagtttcgtacgtaygaggctctgcgg
cgggagcatgactctcagattgttcagatcgccatggaaggggggttgcgcatcgcgcct
gaccagtggtcttctctgttgtatggagatcagtcacacaagtcacacatgcagtctatc
atagataagctgcagaccccggcatcttttgctcaaagtgtgcaggagctgacaattgca
ctgcaaaggactggggacccagccaacctcaacagactacgaccccacttagagctgctg
gcaaacatcgatcccagtcccgatgctcctccgccaacatgggagcagcttgagaagggt
ttggtagcagtgaaaacagtagtccatggcctggttgatttcattcaaaaccacagcaaa
aaaggagctgatcctcaacagcctcctcagcacagcaagtataaaacatacatgtgtcgt
gacatgaagcagaaaggcggctgtcctcgtggcgccagctgtacctttgcccactctcag
gaagaactagagaagtatcgtaagatgaataagcgcatggcgggtcgctcaggagtggtg
tttccagatgacggccttactcctgatgtaacggtgaccagaaagcattcaccagtcacc
aatggcagcggcgcgccaaacttgccccaattagtcgcccggggcaccgatacagtccca
tacgagttgctgtctaaacctgccaagatggacggaggaagtccaagtgttcctggatcg
ccaccagatgtcctggaccccatgcccaaaagcggtataccactgccacctcatgcaatg
gctcaccccaggataccagcagatcacctcacaggggtcaagcatatccccggggtcgcc
aggggctctccagtttatcctcaaccgcaaccccgtgacgtatatgacattcgtccccca
cctgcctctcagtatgagccgccacagtacccaggaggttatccctaccaacagccaaca
cagtatgtccgggaatacatccgtaacccccctccgccgagtgagtcaggacccccttac
cacgacccttacagtggctacagcgctccggaccgcccctacccctcccagcactctggc
ccaccttttccctactcccacccatctcactatgacagaggtcaccacggtgcctacagc
gctcctcccccgccccctcagccttatccgtctcagagggatcccctcgatgtcccgccc
ccctcagcggggcaggccaactctctctaccaccaagaagtgagttcccgggacagatat
gccccagacggctactatcctccgggttcccagcctccacctatgaggacctacgtcagg
gggtcacaatacagcggttcacagcccagcctggactatctccaccgacgacggcaggaa
ctgttatctcagctggcagaaaggaaggtgatctctcctccaccatttgctgcctccccc
actctttcacatcccttccccagcgactacccccctgagtatggcgacgagagctccaaa
acgatgaaatgcagagagcccgactacgcggggcagtactcgccctggtcctgcgaaacc
attggctcttatattaactcaaaggatgccaaacccaagaacgttatggctcctggtacc
atggagatgatgaatgtggacgataaaggtcagagggagccatcattggaggcccctcgc
aggggaacagaagtgaaagatgatgaccctattataccttttggcccccagcccactgtg
tcacgcttcggcgccatctcccgcacttcaaagactggctatcagaccactggcccagtg
caagctatggctgccactctccagaaccccaactctaaacacatgaccatgcctgattac
tcatatggaagtcatggaggatgggttggagcttcatacccctcccaccagactgcctcc
tcagctcagggacactttgagcgccttcccatgacaaccccagatagagaacagctaaag
attgagctgcagcaggtcaatcagcagatcactcaacagacccagatgcacaacatagag
gctgccagtaactctttgctcctgcagagggaggccagcgcattggtcgtccagcctgtg
caacccagccagggcccagctgcagtggttccacagcaaccgcagcccaaatggcyagta
gggggtgccggtgtgtcagctgtctccaatgagcagttaagcttggagctccaccaggtg
gagagagaaattggcaagaggacccgagagatggctttggaaaaccaagtagctcatgat
gttcaacagtacaaaatgcagcctgcagagaatggacaaccagagcacgagaaccagctg
gaagaaatctctctggctctcggcgaagtatccaacggctccagcagtctgcaagaaaat
gcagtgggcgggtccatgctgtcgctgaccaataagacggctgcattgagcatgtgttct
gatccagttgtygctggttcagagatgcagaagaatggcgttgtccactcctgctcatag
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integrated database retrieval system
