KEGG   Poecilia reticulata (guppy): 103479753
Entry
103479753         CDS       T05149                                 
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pret00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    103479753 (ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pret03019]
    103479753 (ndc1)
Messenger RNA biogenesis [BR:pret03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     103479753 (ndc1)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 103479753
NCBI-ProteinID: XP_008432604
UniProt: A0A3P9P5J3
LinkDB
Position
LG17:complement(23390895..23401370)
AA seq 669 aa
MFPSETSCWFIRKVIWWRAAASIAWSVLLLPPTTAVFVFLSKFSFLHPIQTISECLSLLM
SSCLIFSFILLGGVVIMVGFLNLEYYTVIPTIACSKIALLGQLLHPRQXINSFAHCLMGV
IVGWCCAVTVGSRYETLGCPCKSSDGVPQMGLNEYHLVFLLAGAFVGFSHSLRGVIHNIN
YVSFNAVQQYKYLHFKGALPLVLKCSAIQAFYSIRNFTVAYFFLGYIPKTWICKTLNLHL
DSSVHRLDSITGFVDLSLLYHLWISATFLLFTWYTTLLLFRIFVTEVYSFPVQPTFTEDS
HQCLPRVLTDQQPMILKFLALQDLALLSKHSPSRRGEVFSLSQPGGHPYNWNAVSRECLA
LLADLTQRLVAYHETVATNGRAKSLSSGSERKTSSDTSCYSGTEDLMSTRPTFLTKTPAS
VFARSFAGGPHSPLTAPFTPDLDSPFSSPTLRRLTGPVDQCSPWHGSVQSPHIMRRAPKL
WSTSAESQVSSSPPRSPASVPSPKQEPAKPSFLAQFLQNRKEQVKNFLAKRVLIMYLFNK
LPEASSQALFADSQAHIWALEVLSYLVQASFTEDQFGVVQTTLPSILSSMLHLQEAVDRH
FKLPHASSKPVRSANSMEDFTYKTLRFALRATLKTAIYRITTTFGSHLNAVQMSAEHRKR
LQQFLEFKE
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgtttccttcggaaacaagctgctggtttatccgcaaggttatttggtggagagctgct
gccagcattgcctggtctgtcctgttgttgccgcccaccacggcagtttttgtgtttctc
agcaagttcagttttctgcaccccattcagactatttcagaatgcctgtctctgctgatg
agttcctgtttgattttctccttcatcctgcttggtggagtggtcatcatggttgggttc
ttgaatttagagtactatacagttatcccractattgcctgctctaaaatcgcactgctg
ggtcagctgcttcaccctcgccagrttatcaactcctttgcccactgcctgatgggagtg
attgtaggttggtgttgtgcggtcactgttggtagcagatatgagacactcggctgcccg
tgtaaaagtagcgatggtgttcctcagatggggctcaatgagtaccacctggtctttttg
ctggcaggagcatttgtcggcttctcccacagcctccggggagttatccataatataaat
tatgtctccttcaatgccgttcagcaatacaaatatctccacttcaaaggggctctgccc
ttagtgctgaagtgcagcgccattcaagcattttactctatcaggaacttcactgtcgct
tatttctttctgggttatatcccaaaaacatggatctgcaaaactctgaatcttcatttg
gacagctctgtccatcgtctggacagcataactggatttgtggacctgtccctcctctac
cacctctggatcagcgccaccttcctcctcttcacctggtacaccacattgctgctcttt
aggatctttgtcacagaggtgtacagttttcctgtgcaaccaacttttactgaagattcc
caccagtgtcttcccagagttctcaccgaccaacaaccaatgatcttgaagttcctagcc
ctgcaggacttggctctgctgtccaaacattctccatccagacgcggtgaagtcttcagt
ctcagccagccaggcggacatccttataactggaacgctgtcagtagagagtgtctggct
ctgctggccgatctgacgcagagacttgtggcttatcatgaaaccgtagcaaccaacggg
agggccaaatctctgtccagtggcagtgaaaggaagacttcatctgacacatcatgttac
tctggtacagaagacctgatgagtacaagaccaactttcctaaccaagactcccgcttcg
gttttcgcccgctcttttgccggaggtccacacagccctctgacggcaccgttcacgccc
gacctggacagccccttttcctctcccaccttgcggcggctcaccggtccggtggatcag
tgctcgccgtggcacggctcggtgcagagcccgcacatcatgaggcgggcgcccaaactc
tggtccacctccgcagagtcgcaggtcagcagcagcccaccacgctctccagcctcggtt
cccagtcccaaacaggaacccgccaaaccaagttttctggcccagttccttcaaaacaga
aaagaacaggttaaaaatttcttggcaaagcgggtgctgataatgtatttgtttaacaag
cttccagaagcctctagtcaggccctcttcgccgacagccaggctcacatctgggcgttg
gaagtgctgtcatacctggttcaggcctccttcacagaggaccagtttggggttgttcag
actacattacccagcattctcagctccatgctgcacttacaagaggctgtggatcgacac
tttaagctgcctcatgcttccagtaagccggtccgctccgccaacagcatggaggacttt
acctacaaaacactgcgctttgctctcagagccacactcaagactgccatttacaggata
accaccaccttcggaagtcatttaaacgctgtccagatgtctgcagagcaccgaaaaaga
ctgcagcagtttctggagttcaaagaataa

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