Poecilia reticulata (guppy): 103480250
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Entry
103480250 CDS
T05149
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04382
Cornified envelope formation
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
pret04518
Integrin signaling
pret04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103480250 (col4a6)
04518 Integrin signaling
103480250 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103480250 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103480250 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103480250 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pret04147
]
103480250 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103480250 (col4a6)
Exosome [BR:
pret04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103480250 (col4a6)
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103480250 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103480250
NCBI-ProteinID:
XP_008433352
LinkDB
All DBs
Position
LG18:5880176..6030895
Genome browser
AA seq
1703 aa
AA seq
DB search
MKLLICVLTVSCVLRSTHGGGKSDEPCAGLDCSRGCKCFPEKGSRGRPGPMGEIGRPGPD
GPRGVIGPRGPKGEKGHIGLKGPSGDKGDKGPMGVPGFRGTDGVPGHPGQQGSRGPPGKD
GCNGTIGDPGLPGYGTGTPGYPGFQGPAGPKGQKGETVYFTDISEGVPGEPGPRGPPGLR
GPTGPPGSQGPRGINGFPGLPGPPGPQGPEGSRGDIYRGGKGDKGDVGLPGEPGQPLINV
IVEFVGFPKGDKGLQGDPGPKGIKGYPGLPGPPGPFGYRGEYGEQGILGYPGQRGPAGFV
GPPGPVGLKGLPGQPGFLGQPGFIGPKGDQGDIGLPGPPIYISDYGSFVQGPPGDQGFPG
RPGSTGDQGPPGYIGPPGPPGTFRIGGPGGPGFPGVAGQKGNKGNPGLPAYGPEGFQGPP
GPDGPTGPPGPPGPQDRSGRPRDPCDIYPPDGPTGDPSRGPSGNPGLPGQTGFPGNSGLK
GFRGDPGDCNCGGGGRGGGVGLPGLPGPQGPRGSFGFQGRKGEPGNPGSPGFSGSLGAPG
RQGERGFIGRKGQKGESSFSGFGVKGDRGAPGLRGPTGETGNPGRDGLPGFSGPPGPPGD
GGVGTIGEKGFPGFPGGKGRPGAPGDPGFGYPGLPGRQGEKGEPGIPGFPGQPGSPGPQG
DNSCGGVIDAGEGTGDKLPCTIYGEPGEQGEPGRPGRPGPQGQPSFPGSPGGRGFDGPKG
QKGEPGFGGQPGPQGFPGPRGDPGVPGIPGVGYDGPRGKDGLPGPPGPKGQPGEVLGVRP
GGPGVAGIPGAPGDKGPPGSPGTPGSPGFDGRPGVSGLKGERGVDGRPGILGLPGLPGGA
ANPIPGPPGFPGSKGLIGPPGCPGYRGRKGEPGEQGFPGPAGMKGTPGLPGENGGTGLRG
LPGLPGPGTIPGRPGTPGRKGERGFPGLMGFSGLPGRPGSPGFPGGKGFPGDRGRDGFPG
GPGRFGLKGDEGNPGAPGIPGPPALMQKGAPGGNGAPGFEGFTGPRGDKGLPGLPGRPGF
PVDSKGQAGQPGFPGQPGPPGFPGTKGERGIMGFPGVTGPRGDDGSPGFPGNPGEFGRTG
AKGLPGETFAYPGAPGVKGQTGDPGFPGSRGIDGSLGDRGFPGRRGPDGQKGIPGETGRP
GTMGPPGVTGLQGQPGFPGRRGSDGSPGLPGGPGGVGFKGLSGAPGLDGLNGLAGPKGPP
GIPGTTIGGDPGLRGAPGQKGERGVSFPGQPGFPGPKGQRGDTGTFGRPGFPGRPGPPGP
STSSNFPGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDTGDPGLPGFPGIPGPKGE
TGRPGGPGFPGFSGLKGAPGDNGLDGAPGVKGLPGEPGFFGFKGRRGSPGRPGRKGPPAI
PVPNLPRPAPIGAAGLPGYNGRPGGPGEPGQPGLSGRPGVKGRTGAVGELGRTGPPGFPG
PVGDPGIPGFPGITGDQGFPGAIGRPGIPGGVGRSIGIGYTLVKHSQTTDVPMCPQGMAR
LWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFNTIPFLYCNPSETCYYASRNDKSFWLSTT
APIPMMPVAEEQIRPYVSRCSVCEAPSQAVAVHSQDLTIPTCPPGWRSLWIGYSFLMHTA
AGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVDPRLEFGAPTQ
QETLKGGQERSRVSRCQVCSKIL
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgctgatctgtgtgctgactgtctcctgtgtgctgagatctacccacggaggt
ggaaagtctgatgaaccgtgtgcaggcctggactgcagcagaggatgcaagtgcttccca
gagaaaggcagcaggggtcgtcctgggccaatgggtgagatcggacggcccggaccagat
gggccacgtggggtcatagggcctcgagggcctaaaggagagaagggccatattggactt
aaaggaccatctggggacaaaggagacaaaggaccaatgggagtgcctggatttcgagga
actgatggagtgcctggtcacccgggtcagcagggcagcaggggccccccagggaaggac
ggctgtaacggaaccattggggacccgggtctgcccggctacggcacgggcactccagga
tatcctggctttcaagggccagcggggccaaaaggtcagaaaggagagaccgtctacttc
acagacatctctgagggggtaccgggtgaaccaggacccaggggcccacctggtctcaga
ggtccgaccggcccgccgggttcccaaggtccaagaggaattaacggattccccggactc
cccggccctcctgggccccaagggccagagggcagccgtggcgacatttatcgaggaggg
aaaggagacaagggcgacgtgggcttgcccggcgagcctggccagccgttgatcaatgtc
attgtggagtttgtggggtttcccaaaggagacaaaggactgcagggtgatcccggccca
aagggaattaaaggataccctggtttacctggaccacctggaccttttggttatagaggt
gaatacggggaacagggcattctcggatacccaggacaaagaggtcctgcgggttttgtc
ggaccgcctggccctgttggactgaagggattaccggggcagccaggtttcctgggacaa
ccaggattcataggacccaagggagaccaaggtgacatcggactcccaggacctccaatt
tacatcagtgattatggatcttttgttcaaggacccccaggcgaccagggatttcccggc
cgtccgggtagcaccggtgatcagggacctccaggatacatcgggcctccgggaccgcca
ggcactttccgcattggtggtccaggaggtccgggttttcctggtgtcgccgggcaaaaa
ggaaacaagggtaacccgggcttaccagcttacggcccagagggtttccaaggtccccct
ggacctgatggtcctactggtccccctggtcctccaggtcctcaagacagatcaggccgg
cccagggacccctgtgatatctatcctcctgacgggcccacaggtgaccccagtagaggc
ccctctggaaaccccgggctgcctggccagacgggatttccaggaaactcgggacttaaa
ggctttagaggtgaccccggtgactgtaactgtggaggaggaggaagaggaggaggtgtc
ggcctgcccgggttacctggacctcaaggacccagaggcagctttggcttccaagggcgt
aaaggtgagcccggtaacccgggttctcctggtttcagcggcagtctgggggcgcctggt
cgtcagggtgagaggggattcattgggcgtaaaggacagaagggggaatcgtccttctcc
ggtttcggggtgaagggagatcgaggggcacctggactcagaggacctacaggtgaaaca
ggaaaccccggcagagacggtctgcctggcttctctggccccccaggacccccgggtgat
ggtggtgttggcacaatcggtgagaagggtttcccaggatttcctggaggcaaaggtcga
cccggtgcccctggcgatcctggattcggctaccctggcctaccgggccgtcaaggtgaa
aaaggagagcctgggatccctgggtttcctggacagccaggttcaccaggcccgcaaggt
gacaacagctgtggaggggttattgacgccggagagggaacgggcgataagctaccttgc
accatatatggtgaacctggagagcaaggtgaacctggcaggcctggacgaccaggcccc
caaggtcagccaagcttcccaggatcccctggaggtcgagggtttgatggccccaaggga
caaaagggagaacctggttttggaggccaaccaggaccacaaggttttcctggacctaga
ggagatcccggagttccaggtattccgggagttggctatgatgggcccagagggaaagac
ggccttccaggacctccaggacccaaaggccagcctggagaagtcctgggagtaagacct
ggaggtccaggagtggctggcatacctggtgcacccggagacaagggcccgccagggagt
ccaggaacacccggatcacccggcttcgatggacggcctggtgtttctggtctgaaggga
gagcgtggagtggacggccggccgggaattctgggtcttcccggacttccaggtggcgcg
gccaatcccatccccggtccacccggatttcccggcagcaaaggactcatcggaccacca
ggctgcccaggttatcgcggtcggaaaggtgaaccaggagaacaaggattcccgggcccc
gctggaatgaaaggaaccccaggactccctggtgaaaacggaggaacaggtctgagggga
ctccctggactaccaggtcctggaaccattcccggaagacccggaacgccgggaagaaag
ggtgaaagaggattcccaggactgatgggtttctctggactaccgggtcgtcccggaagt
ccaggatttcccggtgggaaagggtttcccggagaccgtgggagagacgggtttcctggc
ggtcctggacggtttggactgaaaggtgacgaaggaaaccccggggcccctggtattcca
ggccctcctgctttaatgcagaaaggtgcaccagggggcaacggagcccccggctttgag
ggctttactggacctagaggtgacaagggtctcccaggcctgcctggtcgtcccggcttc
cccgtggacagcaaaggccaggccggacagccgggtttccccgggcagcccggcccaccg
ggcttccctggaacaaagggggaaagaggaatcatgggattcccgggcgtgacggggccg
aggggtgacgacggctcgccgggattccccggaaatcctggagaatttggtcgaaccgga
gccaaaggtctacccggagagacttttgcctatcctggagcaccgggagtgaaaggccag
actggagatccaggttttccaggttctcgaggcatcgacggttcccttggcgacaggggc
tttccaggacgccgaggtcctgatggacaaaagggtattcccggtgaaacggggcgaccc
ggaacgatgggtccacctggggttacggggctgcagggtcagcccggattccctggcaga
cgaggatcagacgggtccccgggactgcccggaggtccaggtggcgtcggttttaaaggt
ttgtctggagcgccggggctggacggactcaacggcctcgccggtccgaaaggccctcct
ggaatcccaggtacaacgatagggggagacccaggcctccgcggggcgccgggacagaaa
ggagagagaggtgtttccttccctggacaaccaggcttccctggaccaaagggacagaga
ggagatacgggaacttttggacgtccagggttccctggacgacccggacctccaggtccg
agtacttcatcaaacttcccggggccagtgggagaccccggacttcctggattggacgga
gaatacggtttccagggccctcccggtcctcccgggccaccgggtccgggcacagcacag
ggagacacgggagacccagggctcccaggattccctggaatccccggcccaaagggagaa
acgggacgtcccggaggccccggattccccggcttctctggcttaaaaggagctccgggt
gacaatgggctagacggcgctccaggtgtgaaaggattgcccggcgagcccggattcttc
ggattcaaagggcgtcgaggatcaccggggcgacctgggcgtaagggtcctcccgcaatc
ccagtgccgaacttaccgcgacctgcacctattggagcggctggtttacccggctacaac
ggacgacccggtggtcccggagagcccggccagcctggtctctctggacgtccaggtgta
aagggtcgcaccggcgctgtgggtgagctcggcaggaccggaccgcccggttttccaggg
ccggttggggatccgggcatccctgggttcccagggatcactggagatcaaggttttccc
ggagccatcggtcgtcccggtattcccggcggcgtcggccgcagcatcggcatcggctac
actctggtgaagcacagccagaccaccgatgtcccaatgtgtccccaaggcatggcccga
ctgtgggaaggatacagcctgttgtacgtggagggacaggagaaggcacacaaccaagac
cttggtcagccgggttcgtgcctcccaaggtttaacaccatccccttcctctactgcaac
ccatctgagacctgctactacgcgagccgcaacgacaaatccttctggctgtccacgacc
gcgcccatccctatgatgcctgtggccgaggagcagatccggccttacgtcagcaggtgt
tcggtgtgcgaggctccgtctcaggcggtggcggtccacagtcaggacctcaccatccct
acctgcccacccggctggaggagtctttggatcggatattccttcctcatgcacacagca
gccggcgccgagggcggcggtcagtccctggtgtctcccggctcttgcctggaagacttc
cgagcgacgccgttcatcgagtgcaacggcgccaggggcacctgccactacttcgccaac
aagtacagcttctggctcaccacagtcgacccccggctggagttcggcgcgccgacgcag
caggagaccctgaagggcggtcaggagcgctccagggtcagccgctgccaagtctgcagc
aagatcttgtag
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integrated database retrieval system
