Poecilia reticulata (guppy): 103480252
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Entry
103480252 CDS
T05149
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04382
Cornified envelope formation
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
pret04518
Integrin signaling
pret04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103480252 (col4a5)
04518 Integrin signaling
103480252 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103480252 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103480252 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103480252 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pret04147
]
103480252 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103480252 (col4a5)
Exosome [BR:
pret04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103480252 (col4a5)
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103480252 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103480252
NCBI-ProteinID:
XP_008433359
LinkDB
All DBs
Position
LG18:complement(5822327..5880008)
Genome browser
AA seq
1688 aa
AA seq
DB search
MTRGLRRLRQPAWVVIWLVLYATIQLSDSAACNGCGGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGTRGEKGSDGPSGPSGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGEPGFPGSSGIPGRQGFPGPPGLPGEKGDRGDVFYTNNYGLKGAVGLPGL
PGSPGSPGPTGLPGPTGPPGIPGYEGIPGPPGPPGPKGNMGLNFEGPKGDKGDQGLPGPP
GPPGPGQGEQVRPPPTEIQRGDKGDPGPPGPPGDPGSTGPPGPSGGQKGEKGEPGEAGKR
GKQGKDGDPGAIGYPGLKGEPGSPGLPGRDGERGQKGDRGFPGPPGPVIRPTNGAAVGPK
GEPGFPGNPGAKGERGPQGFSGPPGTPGVPGIGGSGPPGPPGFPGDKGQKGDPGTPSNAL
PGPPGRPGNPGNPGPQGPPGPPGYSSPVDNCLPGEPGLPGIQGQKGFPGEQGQKGQKGET
CVNCIDGGNPIPGPPGPPGPPGFPGSPGPQGLKGEPGFQGITGLSGPPGVPGSVGAPGFP
GEKGEPGDTFGGGGVKGEKGDSGFPGPPGLPGLDGRPGRDGAPGTPGPKGAPGSLLLKGE
RGPPGDTGPPGIPGDRGPPGGPGYGVPGAPGEKGAQGNSGIPGIPGQPGVKGEPGPTVTE
KGQPGPKGIDGNPGSPGPPGPRGTDGQPGSPGFPGPKGEPGQPGVGLPGPAGVKGFPGIP
GQPGAPGKVGRPGIDGFPGPPGFPGPKGEAGFGLPGPPGQPGLAGAKGFPGQKGDPGFPG
NPGGPGRPGFDGGPGLKGEPGSPGQPGPRGPPGSATSGVQGPPGPPGPPGPMGPTGYPGG
SGEKGDPGPPGLDIPGSPGDRGNPGFPGPPGPIGIPGPPGGPGRDGAPGFPGPKGDMGSM
GPPGPSGGPGSPGGPGAPGLKGEPGFPGSNGIPGGPGSKGEKGDPGSPGLPGPIGPVDIR
GAKGDPGTPGSPGSPGPKGIAGLPGDPGLPGQDGRSGIPGPPGLKGEPGIPGSPGGPGFP
GPKGAMGDMGIPGPMGSKGTAGFQGRPGSPGQPGIPGLQGPKGDPGSAGVGPPGPQGQKG
DPGQPGFPGSPGGKGGPGTPGLPGLPGLPGAKGDVGLAGFQGPPGFPGPKGLDGGPGAPG
LSGAPGRPGESGRPGPPGQVGEKGQPGRDGIPGPAGVKGEPGIPGFGVPGPSGLPGSPGE
KGNPGLPGPTGGPGFPGPKGDTGFPGPPGSPGVSGPPGPPGLPFQGIKGNQGPPGPPGRA
GPAGPPGVPGPEGPRGLPGGGGVKGDKGNPGNPGLPGQPGQKGDPGFPGAPGPSGGPGGP
GPKGDIGFPGVSGFPGSKGEPGLPGPSGLPGDPGVDGAPGPPGDPGSSSPVDYVKGAPGP
PGPPGSPGATGPPGSPGAPGSSGLPGPSGDTGSPGPPGFNGPPGKKGDTGPAGQPGQKGN
TGPPGSDGPQGPPGFPGSGSAAHGFLLTRHSQSEITPECPSGTNFIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTLEPMPMSMEAVTGDNI
KPYISRCAVCEAPAMVIAVHSQTIQIPSCPANWRSLWIGFSFMMHTSAGAEGSGQALASP
GSCLEDFRSTPFIECHGRGSCNYFSNSYSFWLATVEKLDMFKKPQSETLKAGNLLTRVSR
CVVCMKTT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgactagaggcttgaggcgcctgcgacagcctgcctgggttgtgatttggctcgtactg
tacgccaccatacaactatccgactctgcggcttgcaatggatgtgggggctccaagtgt
gactgcagtggagtgaaaggagaaaagggggaaaggggtttcccaggtcttaccggacag
ccaggggtcccagggttccccggacctgagggaccaatcggaactagaggagagaaggga
agtgatggaccttcaggaccatctggtccaaaaggaataagaggaccttccggattgcct
ggatttccaggaacgccaggacttccaggtctgccaggacaggacggacccccgggccca
aggggagtgccgggttgtaacgggacaaagggtgaacctggttttccaggtagttcagga
atacctggacgacaaggatttccaggtccacctggtctcccaggagaaaagggagaccgt
ggagatgtgttttacaccaacaattatggactaaaaggagcagttggtttgcccggattg
ccaggatctccgggcagtcctggacccacaggtttaccaggcccgactggccctccagga
attccaggctacgagggtattccaggtcctccaggtcctcctggacctaagggaaacatg
gggttgaactttgaaggtcccaaaggagacaagggtgatcaaggcttgccgggacctcct
ggtcctccgggaccaggtcagggggaacaggtcagaccaccaccaacagagatccagaga
ggcgacaagggtgaccctggccctccaggtccaccaggtgacccaggcagcacaggtcca
cctggtccctctggtggccagaagggagagaaaggagaaccaggagaagcaggaaaacga
ggaaaacaaggcaaagacggagacccaggagctataggatacccaggactcaaaggagag
cctggaagcccaggtctcccaggccgagatggagagagaggacaaaaaggcgaccgagga
tttccgggacctccaggaccggtaattcggcctacgaatggagctgctgttggtccaaaa
ggtgaacccggttttcctggaaatcctggagccaaaggagaaagaggaccacaaggtttc
tcagggcctccgggaacaccaggagttccaggcataggtggcagcggtcctccgggtcct
ccaggtttccctggagacaaaggtcagaagggagaccccggcactccttcaaatgccttg
cccggtcccccaggacgtccgggaaatcccgggaatcctggtccacaagggccgcctgga
cctcctggctattcctcaccggtcgataactgccttcctggagagcctgggcttcctgga
atccagggtcaaaaaggtttccctggagagcaaggccagaaaggtcagaagggagaaacc
tgtgtcaactgcattgacggaggcaatcctataccggggcccccagggcctccaggtccg
cctggcttcccaggctctcctggcccgcaaggtctaaagggagaaccaggttttcaagga
ataacaggccttagtggaccccctggtgttcctggttctgtaggtgctccaggtttcccc
ggagagaaaggagagccaggagataccttcggaggtggtggtgtgaaaggagagaagggt
gacagtggtttccctggaccacccggtctgcctggcctggatggtcgacccggtcgtgat
ggagcgcctgggacgcctggccccaagggagctcccgggtctctgctcttaaaaggagaa
cgaggtccccctggtgacacaggtccgcctggcatcccaggagacagaggtccaccaggc
ggccctggctatggagtcccgggtgcaccaggggagaaaggtgctcaaggcaactcagga
atacctggcattcccggacaaccaggtgtaaaaggtgaaccaggtccgacggtcacagag
aagggtcagccaggacccaaaggaatagatggcaacccagggtcgcccggtccgccaggt
ccgcgaggtacggatggacagcctggttcaccaggttttcctggaccaaagggtgaaccg
ggacaaccgggcgtcggccttccaggtcctgcaggagttaagggattcccaggtattccg
ggccagccgggagcacctggaaaagtagggagaccgggaatagatggattccccgggcca
ccagggtttcctggaccaaagggtgaggcaggctttggacttcctggtcctcctggtcaa
cctggactagcgggagctaaaggattccctggacaaaagggagatcctggtttccctggc
aacccaggtggaccagggcgacctgggtttgatggcggaccaggacttaaaggggagccc
ggctcaccaggccaacctggacctcgtgggccccctggaagcgcaacaagtggtgtacag
ggtcctccaggccctcctggaccccctgggccaatgggaccaacaggatacccaggagga
agtggggagaaaggagacccaggtccaccaggcttagacatcccagggtcaccaggtgac
agagggaatcctggttttcctggcccccctggaccaataggaatcccaggacctcctgga
ggacctggaagggacggcgcacctggatttccaggtccaaaaggtgacatgggttcaatg
ggacctccaggaccatctggaggacctggctctccgggaggacctggtgcacctggtctt
aaaggtgaaccaggatttccaggcagtaacggcatcccaggtggacctggttctaaagga
gaaaagggagacccaggttccccgggactcccaggacccattgggccagtagatataaga
ggagcaaaaggagatcctggaactccaggatcaccaggctctccgggacccaaaggcatt
gcaggtctccctggtgaccctggattgcctggacaagatggacgctctggcattcctgga
ccgccagggcttaagggagaacctggtatcccagggagtcctggtggtcctggatttcca
ggtccaaaaggtgcaatgggagatatgggaattccaggacctatggggtcaaaaggcaca
gcaggttttcagggtaggccaggatccccaggtcagccaggaatacctggcctccaagga
ccaaaaggtgacccaggttctgctggtgttggaccacccggaccacagggacaaaaggga
gatccaggtcagcccggattcccaggaagtcctggaggtaaaggaggtccgggaacacct
ggtcttcctggtttaccagggctaccgggggccaaaggagatgtaggcctcgcaggattc
caaggtcctcctggtttccctggtccaaagggtcttgatggtgggcctggagcccctggt
ctctcaggagctccaggtagaccaggagagtctggtcgaccaggaccaccaggacaggtt
ggggagaagggtcagccgggaagagatgggatcccaggaccagccggtgtcaaaggagaa
ccaggaattcctggctttggcgttccaggtccttctgggcttccagggtcgccaggtgaa
aaaggaaacccaggccttcctggtcctactggaggcccaggatttcctggcccaaaaggg
gacaccggctttccaggtccaccaggttctccaggtgtcagtggtcctccaggtcctccg
ggactgccattccagggcattaaaggaaatcaaggaccccccggaccacctggaagagca
gggcccgcaggtcctccaggtgtgcctgggccagagggtccccgcggtctcccaggaggt
ggcggcgttaagggagacaaggggaatcccggaaatccgggtctgcccggccagcctggt
caaaaaggagatcctggttttccaggagcaccgggcccctctggtggtcctggtggccct
ggtccaaagggagatataggatttccaggcgtttccgggttcccaggatcaaagggtgag
ccgggacttcctggtcccagtggacttcctggagatcctggggtcgacggagcacctggc
cctcctggagatcctgggtcttcatcacctgttgattatgtgaaaggagcgccaggacct
ccgggtccaccaggaagcccaggtgctacaggcccacctggttcgcctggagcccctgga
tcctcaggtctaccaggcccctctggagataccggttcacctggtcccccaggcttcaac
ggcccacctggcaagaagggagacactggacccgcagggcaacctggccaaaagggcaac
actggcccacctgggtcagatggtccacagggtccgccgggttttccgggctcagggtca
gcagcccacggcttcctcctcacccgacacagccagagcgaaataacgccagagtgtcct
tccggaaccaacttcatctacgacggatattccctgttgtacgtgcaaggcaacgagagg
gctcacggacaggacctgggcaccgccggcagctgtctgcgccggttcagccccatgcct
ttcatgttctgcaacatcaacaacgtctgcaactttgctgcccgtaacgactactcctac
tggctgtcaactttggagcccatgcctatgtccatggaggctgtgactggagacaacatc
aagccgtacatcagcaggtgtgctgtgtgtgaagctccagccatggtgattgcggtccac
agccagaccatccagattccctcttgtcccgcaaactggagatccctgtggatcggattc
tccttcatgatgcacactagcgcaggtgccgagggctccggtcaggccctggcctctccc
ggctcctgcctggaggacttccgcagcacgcccttcatagagtgccacggcagagggtcg
tgtaactacttcagcaactcctacagcttctggctggctactgtggagaaacttgacatg
ttcaagaaaccccagtcagagactttaaaggcaggcaacctacttacacgtgttagccgc
tgtgtggtttgcatgaagacaacgtaa
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