Poecilia reticulata (guppy): 103480466
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Entry
103480466 CDS
T05149
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03020
RNA polymerase
pret03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103480466 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
103480466 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pret03021
]
103480466 (polr2a)
03400 DNA repair and recombination proteins [BR:
pret03400
]
103480466 (polr2a)
Enzymes [BR:
pret01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103480466 (polr2a)
Transcription machinery [BR:
pret03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103480466 (polr2a)
DNA repair and recombination proteins [BR:
pret03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103480466 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
103480466
NCBI-ProteinID:
XP_008433641
UniProt:
A0A3P9PCV5
LinkDB
All DBs
Position
LG18:10600209..10613366
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKLLVDSN
NPKIKEILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSNKAFEKKFRFDCTNERALRRVLQEDVVKDVLTNAHVQSVLEKEFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVHELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPVSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggtgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcgtcatcagcccagatgaacttaaacggatgtctgttaccgaagggggtatcaaa
taccctgaaaccacagaaggcggacgtcctaagcttggtggccttatggatccaagacaa
ggggtcatagaacgcagtgggagatgtcagacatgtgcaggcaacatgactgaatgtccg
ggccacttcggacacatagagctggcgaagccggttttccacgtcggcttcatatcaaaa
ataatgaagattcttcgatgcgtctgcttcttttgctcaaaacttttggtggattccaac
aatccgaagatcaaagaaatccttgtgaaatccaagggccagcccaggaagcgtctaacc
catgtctacgagctgtgcaaaggcaaaaacatatgcgagggaggggaagagatggacaac
aaatttggaatggagccacaggagacggaggaggacattaccaaggagaagggtcacggc
ggctgcgggcgctaccagccgcgcatccgacgctcgggcttggagctgtacgccgagtgg
aagcacgtcaacgaggattcccaggagaagaaaatcctgctgagtcccgaacgcgtccac
gagatcttcaagcgcatctcggacgaagaagacatcatcttgggcatggaccccaagttc
gcccgtccagagtggatgattgtgaccgtgctgccggtgcctccgctggccgtgaggccc
gccgtggtcatgcagggctcagctcgcaaccaggacgatttgacccacaagctggcggac
atcgtgaagatcaacaaccagctgagaagaaacgagcaaagcggcgcagctgctcacgtt
atcgcagaggatgtgaagctccttcagtttcacgtggccacgatggtcgacaacgaattg
ccaggcctgccgagggcgatgcaaaagtctggccgccctctcaaatccataaagcagcgt
ctaaagggaaaagaggggcgagtgcggggtaacctgatgggcaaacgcgtggacttctcg
gcccgaaccgtcatcacccctgatcccaacctgcagatcgaccaagtgggcgtgccacgt
tccatcgcggccaacatgacgttccccgagatcgtcacaccctttaatatcgacagattg
caagagttggtccggcgaggcaacagccagtaccctggagcaaagtacattatccgagac
aacggagacagaatcgacctgcgattccaccctaaaccaagtgaccttcatctgcaaatt
ggctacaaggtggaaaggcacatgtgcgacggtgacatcatcatcttcaaccgacagccc
acgctgcataaaatgtccatgatggggcacagagttcggatcctgccctggtcgacattc
cgacttaacctcagcgtcaccaccccttacaatgccgacttcgacggggacgagatgaac
ctccacctgccccagtcgctggagacgagggcggagattcaggagctggccatggtgccg
cggatgatcgtcacgccccagtccaaccggcccgtcatgggtatcgtgcaggacaccctc
acagccgtccgcaagttcactaaaagagacgtgttcttggagaggggtgaggtgatgaac
ctcctgatgttcctgtccacctgggacgggaagatgcctcagccggcgatcctcaaaccc
cgtccgctgtggacggggaagcagatcttcagcctcatcattccaggacacatcaacgtg
atccgcacccacagcacgcaccccgacgatgaggacagcggcccgtacaaacacatctcc
cccggcgacaccaaggtcatcgtggagaacggggagttgatcatgggcatcctgtgtaag
aagtctctgggaacctcggccggctccctcgtccacatctcctacctggagatgggccac
gacatcaccaggctcttctactccaacattcagacggtggtcaacaactggctgctcatc
gagggtcattccattggtattggagactccattgctgatgccaagacgtacctcgacatc
cagaacaccatcaagaaggccaaacaggatgtgatagaagttattgaaaaagctcacaac
aacgagctggaaccgacacccggtaacaccctgaggcaaaccttcgagaaccaggtgaac
cgcatcctgaacgacgcccgtgacaaaacgggatcctctgctcagaagtcgctgtccgag
tacaacaacttcaagtccatggtggtggccggctccaagggctcaaagatcaacatctcg
caggttatcgccgtggtgggccagcagaacgtggagggtaagcgaatccccttcgggttc
aagcaccgcacgctgcctcacttcatcaaggacgactacggccccgagagccgaggcttc
gtggagaactcctacctggccgggctgacgccgaccgagttcttcttccacgccatggga
ggcagagagggtctgatcgacacggctgtcaagactgccgagacgggctacattcagcgt
cgtctgatcaaatccatggagtctgtgatggtgaagtacgacgccacggtgcgaaactcc
atcaaccaggtggttcagctgcgttacggcgaggacggcctggcaggagagaacgtcgag
ttccaaaacctggcgacgctgaagccctccaacaaggcgttcgaaaagaagtttcggttt
gactgcaccaacgagcgcgcgttgagaagggtgctgcaggaagacgtggtgaaagacgtg
ctgactaacgcacatgtgcagagcgtcttggagaaggagtttgagaagatgagggaggac
agggagatcctgagggcgattttccccactggtgacagtaaggtggtgctgccgtgcaac
ctggccagaatgatctggaacgctcagaagatcttccgaatcaacactcggaccccaaca
gacctaaatcccctgcgagtggttgagggcgttcacgagctgagtaaaaagctgattatt
gtcaatggcgacgatcctctgagcaggcaggcccaggaaaacgccactctgctcttcaac
atccatctgcggtcgacgctctgctccaaacgcatgacggaggagttccgcctgtccacc
gaggcttatgactggctgctgggagagatagagaccaagttcaaccaatccattgcccac
cctggtgaaatggttggcgctctagctgcccagtcgctgggagagccggccacccagatg
accctgaacactttccactacgccggagtgtcggccaagaacgtcacgctcggtgtgcct
cgtctcaaagagttgatcaacatctcgaagaggcccaagacgccgtcgctgaccgtcttc
ctgctgggtcaggcggcgcgtgacgcggagagggctaaggacatcctgtgtcgactggag
catacgacgctcagaaaggtgactgccaacaccgccatctactacgaccccaaccctcag
aacaccgtggtggccgaggatcaggagtgggtgaacgtctactacgagatgccggacttt
gacgtgactcgcatctcgccttggctgctgcgcattgagctcgaccgcaagcacatgact
gaccgcaaactgaccatggagcagatcgcagagaagatcaatgcaggtttcggtgacgac
cttaactgcatcttcaacgatgacaacgctgaaaaactggtgctgcgaattcgcatcatg
aacagcgacgagaacaagtttcaagaggacgaggaggtcgttgacaaaatggacgacgat
gtgttcctgaggtgcatcgagtccaacatgctgacggacatgactctgcagggcatcgag
cagatcagcaaggtgtacatgcatctgcctcagaccgacaacaagaagaagatcatcatc
acggaggacggagagttcaaggccctgcaggagtggatccttgagacggacggagtgagc
ctcatgagggtgctcagtgagaaggacgtggatcctgtcaggaccacctccaacgacatt
gtggagatcttcacggttttgggtatcgaagctgtccgaaaagctctggagagagagttg
taccacgtcatctcctttgatggctcctatgtcaactaccgccacttggctctgctttgt
gacactatgacctgccgcggtcatctgatggccatcacgcgtcacggcatcaaccgtcaa
gacaccgggcctctcatgaagtgttcctttgaggagacggtggatgtgctgatggaggcg
tcctctcacggagagtgtgacccgatgaagggcgtgtcggagaacatcatgctcggccag
ctcgccccagcagggaccggctgctttgacctgctgctggatgctgagaagtgcaagtac
ggcatggagatcccgacaaacatccctggcatcagcgtggcggggcccactggaatgttc
tttggctcggtgccgagccccatgagcggtatgtctcccgccatgacaccctggaacacc
ggagccaccccagcgtacggagcatggtcccccagtgttggaagcggcatgacccctgga
gcagcaggtttctctcccagcgcagcgtcagatgcgagcggcttctctccaggttactcc
ccagcctggtctcccacaccagggtcaccggggtctcctgggccagtcagtccatacatc
ccatctccaggtggagccatgtcaccaaactactctcccacctcccccgcctacgagcct
cgttctccggggggctacacccctcagagcccaggctactccccaacgtcgccttcctac
tcccccacctctccctcttactcccccaccagccccaactacagccccacatctccatcg
tactcccctacttcacccagttactccccgacgtctccctcctactctccgacgtctcca
tcttactccccgacgtctccctcctactcccccacttctccctcgtactccccgacatct
ccgtcatattctccaacctctccgagctacagcccaacatcgccgagctacagcccgacg
tcgcccagctactcccctacttcaccctcctactcgccaacctcaccctcttactctccc
acttctccatcctactcccccacctccccttcctattcccctacctctccgtcctactct
ccaaccagtccgagctacagccccacttcgccgaactacaccccaacttcccccagttat
tctcctacctccccttcatactctcctacatcgccctcttactccccaacctcccccaac
tatacaccaaccagtccaaactactcccctacttcaccctcttattcccctacatctcca
tcctactccccctccagtccacgctacacccctcagtcgcccacttacacacccagctcg
ccgtcgtacagccccagctctccatcatactccccaacctcgcccaaatacaccccgacg
tccccctcgtacagccccagctctccggagtacacccccacctctccgaaatactccccg
acgtcgccgaagtactcgcctacatcaccgaagtactcccccacttcccctacctactcc
ccaacaactccgaaatacagccccacctcccccacttactcccctacctccccaacctac
acccccaccagtcccaaatactcccccacctctccgacttactccccaacttcgcccaag
tactcacccacgtctccgacgtactcgcctactagccccaaaggctccacctacagcccc
acctcccctggctacagccccacctcccccacctacagcccggccatcagccccgacgac
agcgacgaggaaaacaactga
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integrated database retrieval system
