Poecilia reticulata (guppy): 103480703
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Entry
103480703 CDS
T05149
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
pret
Poecilia reticulata (guppy)
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pret00536
]
103480703 (col25a1)
Glycosaminoglycan binding proteins [BR:
pret00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103480703 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103480703
NCBI-ProteinID:
XP_008434064
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All DBs
Position
LG18:complement(16846333..17040719)
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AA seq
679 aa
AA seq
DB search
MEKEAKRHYRTTALNIISSLCSVASIAFCVHLSISAADIRSRVVGLESGTSERTFIQVRG
YSMEDFNSLVQQRVDELLSQRSYENFAKIRTARQASADCNCPPGPPGKRGRRGRDGEPGP
PGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
PGPRGPPGDTGKDGPRGLPGLPGDPGQPGEIGLMGIEGPQGPKGSLGPPGIPGTDGLKGD
VGIPGQDGIPGAKGEKGEQGEKGDMGEDGPKGDLGEKGDAGSSAAGIKGEPGEPGRSGQK
GEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGEKGDHGPAGKGDRGEIGPAGPKG
SQGESGMPGPKGSKGDTGDKGDLGSIGPRGPPGQKGDRGATEIIDYNGNIEEALQRITTI
TVTGPPGPPGPIGPPGFKGDRGLPGLPGLDGERGFKGSKGDMGMPGASGEKGSTGLPGLP
GVNGAKGDKGDPGLPGPQGSSITGPPGPPGPHGPSGPMGPHGFPGPKGEPGLHGLKGMRG
EPGHKGDRGHMGLPGASGLDGKPGIRGTDGPPGPAGPAGPKGDIGEKGTPGEPGPRGPYG
LPGAAGTPGLDGLPGLKGDKGDDGGRGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGP
DGLPMPGCWQKGVTPWLVA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaagcgaagcggcactatcgcacgacagcgctgaacatcatctcgtcttta
tgttcagtggcgtccatcgcgttctgcgtccatctgagcatcagcgcggcggacatcagg
agccgagttgtgggtttggagagcgggacgtcggagcgcaccttcatccaggtccgcgga
tactccatggaggatttcaattctctggtgcagcagagagtggatgagttgctttctcag
cgctcttatgagaatttcgccaagatcaggacggcaagacaagcctcagctgactgtaac
tgccccccaggacctcctggtaagagaggaaggagaggccgcgacggagaacctggtcct
cctggtcctccaggtccacagggagaaaagggagatcaaggtgaccagggaccacggatg
gtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcataaagcgtcgg
ctcattaagggagatcaaggccaagcaggaccacccgggcctccaggcccacctggccct
ccaggacctaggggccctccgggggacactggaaaggatggacccagaggtttgccgggt
ctcccaggtgatccaggccagccaggagaaattggactcatgggaattgaggggcctcaa
gggccaaagggttcactggggcctccaggtattcccggaacagatggactgaagggagat
gttggcatcccaggacaggacggaatcccaggggccaagggtgaaaagggagaacagggt
gaaaagggcgatatgggtgaagacggaccgaaaggtgacttgggcgagaagggtgatgca
ggctcatctgcagcaggcatcaagggcgaaccgggagaacctgggcggagcggacagaag
ggtgagccaggacttccagggctgcctggactcccagggataaagggtgagccaggattc
ctcggcccccagggagaaccaggacttccaggactcccaggaactaaaggcgagaaaggt
gaccacggaccagcaggaaagggtgatcgaggagaaatcggacctgctgggccaaagggt
tcacaaggagaatctggtatgcctggacctaaagggtcaaagggggatactggagataaa
ggagatttgggatctattggcccaagaggtcctcctgggcagaaaggagacagaggagcc
actgaaatcatcgactacaatggaaacatcgaagaagctctgcagaggattaccactatt
acagtcacgggtcctcctgggccacccggaccaataggacctccaggctttaagggagat
cgcggtctccctggtcttcctggactcgatggggagagaggttttaaaggctccaaggga
gacatgggaatgcccggagcgtcaggagagaaaggaagcactggtttacctggcttacct
ggcgttaacggagcaaaaggagacaaaggagatccaggacttccaggtccacaaggttca
tctataactggccctccggggccaccgggaccccacgggccctcgggacccatgggaccc
catggcttcccggggcctaagggagaacctggtttgcatggactgaagggcatgagaggg
gagccgggacacaaaggagatcgtggccatatgggtctccctggagcctccggcttggac
ggcaagcccggaattaggggcacagacgggcctccgggtccagctggtccggccgggccg
aagggagacattggtgagaaaggtacaccaggtgagccgggacctcgaggaccttacgga
ctacctggagctgccggaacaccaggtttggatgggttacctggattaaaaggagataaa
ggcgacgatggggggagaggagaaaagggggagaagggaaagaagggcaaaaaagggcct
aagggcgagaaaggagaacagggtgccccaggattagatgcaccctgcccattgggtccg
gatggattaccaatgcctggttgctggcagaagggagtcacaccatggcttgtagcctga
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