Poecilia reticulata (guppy): 103481209
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Entry
103481209 CDS
T05149
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103481209 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103481209 (edc4)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103481209 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
103481209 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EDC4L
WDR55
Beta-prop_WDR3_2nd
SYCP2_ARLD
Band_7
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Motif
Other DBs
NCBI-GeneID:
103481209
NCBI-ProteinID:
XP_008434763
LinkDB
All DBs
Position
LG19:complement(4708135..4739658)
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AA seq
1385 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGSSADMQPSDDQRKLSFNGELNGLLGAGLLGTSIS
ESTRPISTDGSIQESQRICLTGDDGSTCIPIVLNNVEIVASQDSGINSKARGSNKVKIQP
VAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLDFSERSLLKGFTGAVTDLA
FAHLDSSLLGCVDEAGNLMVWHLTLTRSKILDQIVVHIQRPEDAPLNSHRRLIWCPYILE
DSEENQDDTSQTLALLHEDGAEVWDLEVLRANYSSWPVDASEIKDGLIIVKGHTQRVSEG
ALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHEGRPLSCLLFCDNHKRQDP
EVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDPFNSTVLPSLKASLDLAAEYLIL
TDVQRKVLYVMELRQDQEKGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEVLPAEEE
SESMSTEGTQGPAESKSGIQIKLYCVHTKSLQDVQIWFQPNSGFNTPGFIPHSDSQDGFA
GFSDHLTDQSSDKDSGSGSQSDLRKIPSLPVPSDFLSNSGASGGPMPKLMTPDAFMTPST
SVPASPGSSASSLTIVTAMSSNSDSTNRAMDDVSQSPIRGENNGGGSLGLSVATSSPRAA
PAVLLPGLENLQALASPSGPLGLDSPQVPDSPLLLPLASPTRARSPDVISSASTVMSQDM
PEIATQTLQLQRSHGLEALQLPALQTDSMASAACALHLLTSPRAATNNGLLPLELGGAEG
SSMADDSESRLGNKPSLLENTLSQENTGVSGGSSDGSVSHTSWPAAPDITRETRNSLRDN
GLGECLREESSERRLSSPYHRRSYHLAQHDSQDVGADQSDPDDEIASLASSSGNCGSRSS
HRMPVKDWKSSPRGSPKLKRKLKKDDGESSQPRHMDPGQFNTETQDELLMLLRSQQRELA
DLCSLVETMPGTIMAQVEHVLMKHQEQEQRRLDRALAENQNRQQQLHEQLSQQLSHALST
ALTNRMDKVLREELKKAVPQTISKSLEPVTGQLNNSIAAKMAAVEVTIKDIVIKVVKSKN
TTDAMGRAAAEAMQGPIQAAYKDAFQSTVLPVFERGCQSMFQQINDSFKQGTQDYIQQLE
SHLKSRKQREQEARDPVIGQLQQAIDGFQSCTDQLASSVSAAVRAEVQHQMQVVVGNLQE
SILSHLQRIVKGEVSLAMREQQAVVTSSIMQAMRSAAGTPVPTAHLDYQSQQANILQLLQ
QGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLATRS
QLKISYLEDAVMNLDHSEPLTRDHMSSVLAQVRSKLLAFLQQDPHSPLSKRARGLLLMLH
GVVNH
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaactctaacatagacatcgagggagcgacccagcacctccgggacatcctg
aagctcgaccgtccggggagcagcgccgatatgcaaccaagcgacgatcagagaaaactg
tccttcaatggagagctgaacggtttactgggagcaggactactggggaccagcatatct
gaatccaccagacccatttccactgatggcagcatccaggagagccagaggatctgcctg
actggtgatgatgggagcacctgcatccccatcgtcttaaacaacgtggagatcgtggcg
agtcaggactcgggcatcaacagcaaggcgcggggcagcaacaaggttaaaattcaacct
gtcgccaagtacgactgggagcacaagtattattacggccgactgatagccgtgtccaac
tccttcctcgcctacgccatcagaggagccaacaaccacgccatgattcgcgtgctgagt
ttggatttcagtgagcgctccttgctgaagggcttcactggcgccgtcacggatctcgct
ttcgcccacctcgactcctctctgttgggctgcgtggatgaggcgggaaacctgatggtc
tggcatctcacactcacgagaagcaaaatactggatcagatagtggttcacattcagcgt
ccagaagacgctccactgaactcccacagacgcctcatctggtgcccgtacatcttggaa
gacagcgaggagaaccaggacgacaccagccagacgctggctctcctgcatgaggacggg
gctgaggtttgggacctcgaagttttgagagccaattacagcagttggccagttgatgcc
tcagaaatcaaagatggcctcattatagttaaaggacacacacagagagtcagtgaaggt
gctctgtcccctgatgggaccgttttggccacagcgagccacgacggttacatcaagttc
tggcagatctacatagaaggaggacaagataagcccagatgtctccatgaactccgacct
cacgaaggacgtcctctctcctgtcttctcttctgtgacaaccacaagcggcaggaccca
gaggttccgttctggaggtttctgataactggagcagaccagaaccaggagttgaagctg
tggtgcacagtttcctggacctgcttgcaaaccatcaggttttctccagatccattcaac
tctacggttcttcccagtctcaaggccagtttagatcttgctgctgaatacttgatcctc
actgatgtgcaaagaaaggtcctctatgtgatggagctacggcaggaccaggagaagggc
aaagcgagcttcacggccgtgtcggagttcctgctcacccaccctgtgctcagcttcggg
gtgcgcgacgtgacccacagccgcctgaggcacaccgaggttctgccagcggaggaggag
agcgagagcatgtcgacagagggcactcaaggacctgcagagtccaaatctgggatccaa
attaaactctactgtgttcacacaaagagtttgcaggacgtccagatctggtttcagccc
aactcggggttcaatacgccaggttttattccccactctgactcccaagatggttttgct
gggttttcggaccacctcaccgaccagagctccgacaaagattctggaagcggctcgcag
tccgaccttaggaagatcccctcacttcctgttccctctgacttcctgtccaactctgga
gcatccggcgggccgatgcccaagctgatgactcccgacgctttcatgacaccaagcact
tcggtacctgcgtctcctggcagcagcgccagcagtctgactatagttacagccatgagc
agcaactctgactcgacaaatagagccatggacgatgtcagtcagagtcccatcagagga
gaaaacaacggcggcggcagtttgggtctctctgtcgccaccagcagtccgagggctgca
cctgcagttctgctgcccggactggagaatctgcaggctctggcttcccccagcggccct
ctgggcctcgactcgcctcaggtcccagattctcctctgctgctgccgctggcctcgccg
acccgggcccgctccccagacgtcatctcctccgcctccaccgtgatgtcgcaggacatg
ccggagatcgcgacgcagacgctgcagctgcagcgcagccacggcctggaagccctgcag
cttcctgcgctgcagacggacagcatggcctccgctgcgtgtgctctgcacctcttgacg
tcgccgcgcgccgccaccaacaatggtttgttgccccttgaactcggaggtgctgagggg
tcgtcgatggcggacgattcggagtccagactcggtaacaaaccgtctcttctggagaac
acgttgtcgcaggaaaacactggggtcagcggagggtcgtcggatggcagcgttagccac
acgtcatggccggcggctccagacatcaccagggagaccaggaacagcctcagggacaac
gggctgggagaatgtttgagagaggagtcaagcgagcgccgcttgagctctccctaccac
cggcgctcctaccacctcgcccagcacgacagccaggatgtcggcgctgaccagagcgat
cccgatgacgagatcgccagcctggcttcgtcctctgggaactgcggctctcgctcctct
cacaggatgccggtgaaagactggaagagctcgccacgaggctcaccgaaactgaagagg
aaactcaagaaagatgacggtgaatcttctcagcccaggcacatggatcccggtcagttt
aacacagagactcaggatgagctcctgatgctgctgcgcagccagcagagggagctagcg
gatctgtgttccctggtggagaccatgccgggaactatcatggcgcaggtggagcacgtt
ctgatgaagcaccaggagcaggagcagcgcagactggaccgagctctggccgagaatcag
aaccgccagcaacagcttcacgagcagctgagccagcagctgagccacgccctcagcacg
gcgctgaccaacaggatggacaaagtcctgagagaggaactaaagaaagcagttcctcaa
accatttctaagagtctggagccggtgacggggcagctgaacaactcgatcgccgctaag
atggccgccgtggaagtcacgattaaggacatcgtcatcaaagtggttaaatccaagaac
actacggacgccatgggccgggccgcggcggaggccatgcagggccccatccaggccgcc
tacaaagacgccttccagagcacagtgctgcccgtgtttgaaagaggctgccagtccatg
ttccagcagatcaacgacagcttcaagcagggcacgcaggactacatccagcagctggaa
tcccacctgaagagccggaagcagagggagcaggaggcgcgggacccggtgatcggccag
ctgcagcaggcgatcgacggcttccagagctgcaccgatcagctggccagcagcgtctct
gccgccgtacgagccgaggtccagcaccagatgcaggtggtggtggggaatctgcaggag
tccatcctgagccacttgcagcgcatcgtgaaaggcgaggtgagcctggcgatgagggag
cagcaggccgtcgtcacctccagcatcatgcaggccatgcgctccgccgccgggacgccc
gtccccaccgcacacctggactaccagtcacagcaggccaacatcctgcagctgctccag
cagggccagctcaaccaggccttccagcaggctctgtctgcgacggacctgaacctggtt
ctgtacgtgtgtgagaccatcgactcccagcaggtgttcggccagacgccgtgccccctg
agccagccggtgctgctgtcgctgatccagcagctgtcctccaacctggccacgcgctcc
cagctcaagatcagctacctggaggacgcagtgatgaatctggaccacagcgagccgctg
accagggaccacatgtcgtcggttctggcccaggtccgatccaagctgctggccttcctg
cagcaggacccgcacagtccgctcagcaagcgggcgcgcggcctgctcctgatgctgcat
ggagtcgtcaaccactag
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integrated database retrieval system
