Poecilia reticulata (guppy): 103481547
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Entry
103481547 CDS
T05149
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103481547 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pret03400
]
103481547 (msh2)
DNA repair and recombination proteins [BR:
pret03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103481547 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
103481547
NCBI-ProteinID:
XP_008435300
UniProt:
A0A3P9NDC6
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Position
LG19:12386065..12408351
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AA seq
937 aa
AA seq
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MAVQPKQNQNLSLDSATEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVF
KTNGVIKYLGSGSRKLESVILSKLNFEAFVKDLLLVKQYRVEVYRNHSKSSKEHDWRIEY
KASPGNLTQFEDILFGGGTGGEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFP
DNEIFSNLESLLVQISPKECLLPQGECSAEGNKLREVVQRGGVLVSDRKRAEFSSKDIVQ
DLNRLLRSKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTKVELGQY
MRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEER
LDLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCHRVYQAVSHIPTLIT
ALESYSGSYKVLLHAVFTSPLADLQTDFIKYQEMIETTLDMNQIEHHEFLVKASFDPVLS
ELREKMDALEKSMQAVLSSAARELGLEAGKTVKLESNAVLGFYLRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNGKLSSLNEEYTRSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVI
AQLDAVASFAVASVSAPVPYVRPRLLDDGRRRLELLQARHPCMETDADTAFIPNDISFVQ
GEKSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVTDSVLARVGAGDSQV
KGVSTFMSEMLETAAILRSXTENSLIIIDELGRGTSTYDGFGLAWAISEHISSKIGCFCL
FATHFHELTALAAQQPSVHNLHVTALTTHNTLTMLYRVKPGVCDQSFGIHVAELACFPXS
VLEVAREKAEELEEFQEPVGDNSKRDEEPEVKRRRTDKQVGENLIQDFLEKVKALPVTTM
TEEEVKAELRRIKQDLVAKNNTYISEILSRCTPVKTA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaaccaaaacctgtccctggacagcgcaaccgaacacggc
tttctgaacttcatattctctatgccggagaaaccggacacaaccttcaggatattcgac
cggaacgactactacaccgtccacgggaaggacgccatatttgctgctaaggaggttttt
aagactaacggagtcatcaaatatctgggctcggggagccgtaagctggagagcgtgatc
ctgagcaagctgaacttcgaggcctttgtgaaggatttgttgctggtgaagcagtaccga
gtggaagtatacaggaaccacagcaagagcagcaaggagcacgactggaggattgagtac
aaggcctctccaggaaacctgacccagttcgaggacattctgttcggcggaggaactgga
ggcgagggatgcgcgggagtggtcgccgtgcggtttgcgacgggagccgatgggcagcga
gtggtcggagtcggctacgtggacgcagcccagaggaccatgggggtgtgtgagtttccg
gacaacgagatcttctccaacctggagtctctgctcgtccagatcagccccaaagagtgt
ctactgcctcagggagaatgcagcgctgaggggaacaaactccgggaggtggtgcaacgt
ggcggcgttctggtctctgacaggaagagagcagagttcagcagcaaggacattgtccag
gatctcaacaggctactgcgatccaagagaggagagacggtggcgagcaacacgctgcct
gaactggacaagcaggtggccatgtcatgtttggctgctgtggttcgattcctcgagctt
ctctccgatgagtccaacttcaactctttcagcctcaccaaggtggagctgggtcagtac
atgaggctggacaacgctgccgtcagggctctcaacctcttccagggttcgcccgacgac
accagtggagctcattcattggccggtttgttgaacaagtgccgcactccgcagggtcag
cggctggtcaaccagtggatcaaacagccacttatggacaaaaccaaaatagaggaaaga
ctggaccttgtggagagtttcgtgtgcgactcggagctgaggcagacttgtcaggaagat
ctgctgcgacgctttccagatctccaccgcctggccaaaaagtttcaccgtcacacggca
acgctgcaggactgccaccgcgtctaccaggccgtgagccacatccccactctcatcact
gctctggagagttactcgggcagctacaaggtgttgctgcacgcggtgttcacctcgcct
ctcgctgacctgcagacggatttcatcaagtaccaggagatgattgaaaccactctggac
atgaatcagatcgaacaccacgagttcctggtgaaggcgtcgttcgatcccgttctgagt
gagctcagggagaagatggacgccctggagaaaagcatgcaggctgtgctgagcagtgca
gccagagaactaggtctggaagccggtaagacggtgaagctggagtccaacgccgtgctg
ggcttctacctgcgggtcacgtgcaaggaggagaagagtctgaggaacaacaagaagttc
accacgctggacgttcagaagaacggcgttcgcttcacaaatggcaagctgagctctctg
aacgaggagtacaccaggagcagggaggagtacgaggaggcccagaacgccatcgtcaaa
gagatcatcaacatcgcctcaggttacgtggatccccttcagacgctgagtgacgtcatt
gcgcagctcgatgcggtggccagcttcgccgtggcgtcggtgtccgctccagttccgtac
gtccggccccgactgctggacgacggccgcaggcgtctggagctgctgcaggccagacat
ccctgtatggagacggacgcggacaccgccttcatacccaacgacatcagcttcgtccag
ggggagaagagcttctatattataacaggaccaaacatgggagggaagtccacgtttatc
cgtcaggtgggtctgattgcgctgatggctcagatcggctgcttcgtgccgtgcgagaag
gcggagctcagcgtgaccgacagcgttctggcccgagtgggagcaggagacagccaggtg
aagggagtgtccaccttcatgtctgagatgttggaaaccgccgccatcctccgctctkcc
acsgaaaactccctcatcatcatcgacgagctcggcaggggaacttctacgtacgacggc
ttcgggctggcctgggccatcagtgaacacatctcctccaaaatcggctgcttctgcctc
ttcgccacgcacttccacgagctgaccgccttggcggcacagcagccgtccgtccacaac
ctgcacgtcaccgccctgacgacccacaacacgctcacaatgctgtaccgagtcaaacca
ggtgtgtgtgaccagagttttgggatccacgtcgccgagctggcctgcttcccccygtcg
gtactggaagtggcgagggagaaggcggaggagctggaggagttccaggaacctgtgggg
gacaattcgaagcgggacgaagagcccgaggtcaagagacggcggacagataagcaagtg
ggagaaaacctgatccaggacttcctggagaaggtgaaggcacttcctgtcaccaccatg
actgaggaggaggtgaaggcagagctcaggaggataaagcaagacttggtggccaaaaat
aacacgtacatcagtgagatactttcccgctgcactcctgtaaaaactgcctga
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