Poecilia reticulata (guppy): 103482010
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Entry
103482010 CDS
T05149
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103482010 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103482010 (parn)
Enzymes [BR:
pret01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103482010 (parn)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103482010 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
103482010
NCBI-ProteinID:
XP_008436164
UniProt:
A0A3P9MSH1
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All DBs
Position
LG1:complement(3985257..3997072)
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AA seq
683 aa
AA seq
DB search
MEVTRQNFKDCLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLMFQFGLCTFRYDSAKSKYITKPFNFYVFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFGHGIPYLNQDEEAQLREQTEERRNQHANGLGTPSFISPSSSKVPAHVPDEQKD
FINKVVEKVERLFNGNGKTLNLDPCTGFQRKLIYQTLSWKFPKGLHVETLETEKKERFIQ
ISKVDEEEKKRREQQKLEKEQEELNNAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKEVAMCVFPRLLDTKLMASTQPFKELINNTSLAELEKQVKETPFKPPQV
ETAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANHLGSFLMPPISYISPRSKLVEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYKIQTYADYIQGKQQEKEKLGQPAKTWGDDSWVKPHY
PSSTTSAGFGFSRRKRSISPTQGEQGGDDGVCGDGWNHYSFPDSTGSKKIKYDDVGGQAS
VEAVESKTSEGWLKMTNSSYSAESSPIPDAKSPEGADSGSYADGTATWHQTPKVPGRKGQ
KSKKKKSDASDSTTSLFEVPEVW
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaggttacacgacaaaattttaaagactgtttaagcacagtgtacagcgccatagag
gaggctgactttcttgccatcgatggagaattttcaggtataagcgacggtcctaatgtc
agtgcattgaccaacgggctggatacacctgaagagagatacacgaagctgaaaaagcat
tccatggactttctcatgttccagtttggcttgtgtacattcagatacgactctgctaag
tcaaagtacattacgaagccttttaacttttatgttttcccgaaaccattcagtcggaca
tctccagacataaagttcatctgtcaaagttccagcattgacttcctggcgagccaggga
tttgacttcaacaaggtgtttggtcatggaatcccgtacctaaatcaagacgaggaagct
cagctgagagagcagacggaggaacggagaaaccagcacgccaacggtctcgggacgcct
tcctttatttccccgtcatcctccaaagtccctgcacacgtacccgacgaacagaaagac
ttcatcaacaaagtggtagagaaagttgagaggcttttcaacggaaacgggaaaactctg
aacttggacccatgtacaggattccaaagaaagctgatataccagacactgagctggaag
tttcccaaaggtcttcatgtagaaacattggagacagaaaagaaggagcgcttcattcag
atcagtaaagttgacgaggaggagaagaagaggagggagcaacagaaactggagaaggag
caggaggagctcaataatgctgtaggcttctccagggtcatccacgccatttctaaatct
ggtaaactggtggttggccacaacatgcttctggatgtgatgcacaccatccaccagttc
tactgtccgctgccagaggaccttcaagattttaaagaagttgcaatgtgtgttttccca
agactactagacacaaagctgatggcctccactcagccatttaaggagctgatcaacaac
acgtctctggcagagcttgaaaaacaagtgaaagaaactccgttcaagccaccgcaagtt
gaaaccgccgaggggttccccagctacgacacggcccaggagcagctccacgaggccgga
tacgacgcttacatcaccggcctgtgtttcatctccatggccaaccacctgggttctttc
ctgatgccgccaatatcttacatctccccacgatcgaaactagttgaacctttcttcaac
aagctctttctgatgcggattatcgacataccctacctcaacatcaccggaccagatttg
cagccgaagagagaccatgtcctgtacgtgaccttccccaaggagtggaagacgagtgac
ctctaccagctcttcagtgcctttggtaacatccaggtgtcgtggatagacgacacctca
gccttcgtctctctaagtcagacggaccaggtgcagatcgctatgaacaccagccgctac
gcagagagctacaagatccagacgtacgcagactacatccagggaaagcagcaggagaag
gagaagctcggccagccagctaaaacctggggggatgacagctgggtgaagccccactac
ccctcctccactacgtctgctgggtttgggttctccaggaggaaacgcagcatcagtccc
actcagggggagcagggaggcgacgatggcgtttgtggggatggctggaaccattactca
ttcccagacagcactggcagcaaaaagatcaaatatgatgacgttggcgggcaggcgagc
gttgaagccgtggagagcaagacgtcagaaggctggctgaagatgacaaattcttcgtat
tcggccgaatcaagtccaatcccagatgctaaaagtccagaaggtgccgactcgggcagc
tatgctgatgggacggctacctggcaccaaaccccaaaagttccaggaaggaaaggtcaa
aaaagcaagaagaagaaatctgacgcgtcagattctacaacctccctgtttgaagtccca
gaagtctggtag
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